Bacteroides nordii: K8P02_15945
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Entry
K8P02_15945 CDS
T07941
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bno
Bacteroides nordii
Pathway
bno03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K8P02_15945 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bno03021
]
K8P02_15945 (rpoB)
03400 DNA repair and recombination proteins [BR:
bno03400
]
K8P02_15945 (rpoB)
Enzymes [BR:
bno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K8P02_15945 (rpoB)
Transcription machinery [BR:
bno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K8P02_15945 (rpoB)
DNA repair and recombination proteins [BR:
bno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K8P02_15945 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UAK41657
LinkDB
All DBs
Position
complement(4055078..4058890)
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
FLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKRIVGRK
LAARVLKTWIEDFVDEDTGEVVSIERNEVIIDRETVIEEEHINEIIESGVQNILIHKDEP
NQSDYSIIYNTLQKDPSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGD
VGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQ
LSNQFAVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
KINDLGFIETPYRKVENAKVDLSDNGLIYLTAEEEEGKVIAQGNAPLNDDGTFIRNKVKS
RQDADFPVVEPAEVELMDVSPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSE
APIVGTGIERQLVRDSRTQITAEGDGVIDYVDATTIRILYDRTEDEEFVSFESALKEYRI
PKFRKTNQNMTIDLRPICNRGDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYE
DAIVLNERVVREDLLTSVHVEEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRI
GARIQPGDIMIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKL
FSRVIKNRSSKLADKALLPKIDDEFEGKASDLKRILVKKLMTLTEGKVSQGVKDYLGAEV
IAKGSKFNVSDFDSLDFTSIQLSNWTNDEHINGMIRDLVMNYIKKYKELDAELKRKKFAI
TIGDELPAGIIQMAKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDI
VLNPLGVPSRMNIGQIFEAVLGRAGKTLGVKFATPIFDGATMEDLDQWTDKAGLPRYCKT
YLCDGGTGEKFDQAATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEGFGAAHILQEILTIKSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHEL
RGLGLSINLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatactgtaaatcaaagagttaattttgcttcgactaagaatccgcttgaa
tatccggatttcctggaagtacaattgaagtcattccaagactttctacaactagacacc
ccgcccgaaaagcgtaagaatgagggattgtataaagtatttgctgaaaacttccctatt
gccgatacaagaaataattttgttcttgagtttttggactattatattgatccgccgcgc
tataccattgatgattgtatagagcgtgggcttacttatagtgtccctttgaaagcgaaa
ctcaagctttactgtactgatcctgaccatgaggattttgatacagtgattcaggatgtg
tttctcggtccgattccctacatgactgacaaggcgacttttgtcatcaatggtgccgaa
cgtgtagttgtgtctcagcttcatcgttctccgggtgtattcttcggtcagagtgttcat
gctaacggtacgaaattatactcggcacgtattattccattcaagggttcatggattgag
tttgctaccgacatcaataatgtgatgtacgcatacatcgaccgaaagaaaaaattgcct
gtaacaacgctgttgagagcgattggctttgaaaatgataaagatattcttgagattttt
aacctggcagaagatgtaaaggtaaataagacaaatcttaagagaatcgtgggtcgtaag
ctcgctgcccgtgttttgaaaacctggattgaagattttgttgatgaagatactggtgaa
gtagtttctatcgagcgtaatgaggttattatcgaccgtgaaactgtcattgaggaagaa
catatcaatgaaattattgaatcgggcgttcagaatatcctgatccataaggatgaaccg
aatcagtctgattactccattatatataatacgctgcagaaggacccgagtaactcggaa
aaagaagcggtactctatatttatcgtcagttgcgtaatgcagaccctgccgatgatgca
agtgcacgtgaggtaataaataacctgttcttctcggaaaagagatatgaccttggtgat
gtaggtcgttatagaatcaacaaaaagttgaatctaacgactgatatggatgtacgtgtt
cttaccaaggaagatatcattgaaatcattaaatatctgattgagttgattaactcaaaa
gcagatgtggatgatattgaccacttgagcaatcgtcgtgtacgtacagtaggcgagcag
ctgtctaatcagtttgctgttggtctggctcgtatgtcacgtactattcgtgaacgtatg
aacgttcgtgataacgaagtgtttactccgattgatttgatcaatgcgaagacaatttct
tctgttattaattcattcttcggaaccaatgctttgtcacagtttatggatcagacaaac
ccgctggctgagattactcacaagcgtcgtatgtctgcactgggtccgggtggtctttct
cgtgaacgtgccggatttgaggttcgtgacgttcattacacacactatggtcgtctttgt
ccgattgaaaccccggaaggaccgaatatcggtttgatttcgtcgttgtgtgtatttgca
aaaattaatgatctcggattcatcgaaaccccatatcgtaaggtagagaatgctaaggta
gatctttctgataatggtttgatttatctgactgcagaagaagaagaaggtaaggtcatt
gcgcagggtaatgctccgttgaatgatgatggaacatttattcgtaacaaagtaaaatct
cgtcaggatgctgatttcccggttgtggaacctgctgaagtagagttgatggatgtttct
cctcagcagattgcttctatcgcagcttctttgattccgtttctggaacacgacgatgct
aaccgtgcattgatgggatcaaacatgatgcgtcaggcagttcctttgttgagaagtgaa
gctcctattgtaggtactggtatcgaacgtcagctggttagagactcacgtacgcagata
actgcggaaggtgatggtgtaattgattatgttgatgctactaccattcgtattttgtat
gatcgtactgaagacgaggaatttgtaagctttgaatcagctctgaaggaatatagaatt
cctaaattccgtaagaccaaccaaaatatgacaattgaccttcgtccgatctgtaataga
ggtgatcgggtaacaaaaggtcaaatcttgacagaaggttattctactgaaaatggtgaa
ttggcattgggtaagaatttgctcgttgcatatatgccatggaagggatataactatgaa
gatgctattgtattgaacgaacgtgttgttcgtgaggacttgctcacttctgtacatgtt
gaagaatactcgttagaggttcgcgaaacaaaacgcggaatggaagaattgacttctgat
attcctaatgtaagtgaagaagccactaaagaccttgatgaaaacggtattgtgcgtatt
ggcgcgcgtattcagccgggagatatcatgattggtaaaatcactccgaagggtgagtct
gatccttcgccggaggagaaattgcttcgtgctatctttggtgataaagccggtgatgtg
aaagatgcttctttgaaagcttctccttcattgaagggggtggttattgacaagaaactc
ttctcacgtgtaatcaagaaccgtagttctaagttggcggataaagctttgcttccgaag
atagatgatgagtttgaaggaaaagcttcagatttgaaacgtattcttgtgaagaaacta
atgacgttgactgaaggtaaagtttcacaaggggtaaaggattatttgggagctgaagtt
attgcaaagggttccaaatttaatgtatctgattttgattcgctcgactttacatctatc
cagttaagtaattggacgaatgatgaacatatcaatggtatgattcgtgatttggtgatg
aactatatcaagaagtataaagagcttgatgcagaattgaagcgtaagaagtttgctatc
actattggtgatgaacttcctgcaggtatcattcagatggcgaaagtatatattgctaaa
aaacgtaagatcggtgttggtgataagatggcaggtcgtcacggtaacaaaggtattgtt
tcccgtgttgttcgtcaggaagatatgccgttccttgaagatggaactccggttgatatt
gttttgaacccattgggtgtgccttcacgtatgaacatcggacagatttttgaagctgtt
cttggtcgtgctggaaagacgctcggcgttaagtttgccactcctattttcgatggtgct
accatggaagatctggatcagtggacagacaaggcagggttgccacgttattgtaagact
tatctttgcgatggtggtacgggtgagaaatttgaccaggcagcaactgtgggggtaacc
tatatgttgaaattgggacacatggttgaagataaaatgcatgctcgttctatcggtccg
tactcacttattactcagcagccacttggtggtaaagctcagtttggtggtcagcgtttc
ggagaaatggaggtttgggcactcgaaggtttcggtgctgcacacattcttcaggaaata
ttaacaattaaatcagatgatgttgtgggacgttctaaagcttacgaagcaatcgttaag
ggtgaacctatgccacaacctggtatcccggaatctctaaatgtgttgttgcacgaattg
agaggtttgggactaagtattaatctggaataa
DBGET
integrated database retrieval system
