KEGG   Bacillus nitratireducens: GSN03_00300
Entry
GSN03_00300       CDS       T07605                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bnt  Bacillus nitratireducens
Pathway
bnt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bnt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GSN03_00300 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bnt03400]
    GSN03_00300 (mfd)
Enzymes [BR:bnt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GSN03_00300 (mfd)
DNA repair and recombination proteins [BR:bnt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      GSN03_00300 (mfd)
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII Cas3-like_C_2 MFD_D3 UB2H RecG_dom3_C AAA_16
Other DBs
NCBI-ProteinID: QUG82022
LinkDB
Position
54042..57572
AA seq 1176 aa
MIGLLEQFYKNEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEATDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq 3531 nt   +upstreamnt  +downstreamnt
atgataggtttattagagcagttttataaaaatgaagagatacaatcggttattaatggg
ctagaagatgggttgaaagagcaacttatatcgggtatggcaacatcttctcgttcatta
ttaatggcagctttatataaaaaaacaaaaaaatcgcaactaattgtgacgcacaattta
taccaagcacaaaaagtacatgaagatttagtggctttacttggtgaaaaagatgtgtgg
ttatatcccgtaaatgaattgatagcatcggaaatcggtgttgcaagtccagaattgaag
gcgcagcgtattgaagtgttaaatcgcttggcggcgggagagaatgggattattgtagcg
ccagttgcaggactacgtagatttttaccaataaaagaattatggaagcaaaggcaaatt
gaaatcaatctagggcaagagattgatttagatgcacttttgcatactttacatcatatt
ggctacgagcgtaagtcaatggtagaagctccaggagagttcagtttacgcgggggaata
ttagatatttacccattaacggaagaattaccatttcgtattgaattcttcgatacagaa
gtcgattctattcgattgtttgatgtggatgaacagcgctctcaagataaaaaggaaagt
gttaagttcggtccagcaacagagtttttattttcacaggaagaattgaaatcgggaatt
aagcatcttgaagaaggtttgactaagacgatgcaaaagctttccgatgataaattaaag
actacagtacttgagacggtaagtcatgaaattgagatgttgaaaaacgggcaaagtata
gaacaaatgtttaaatatttatctattttctataaagaacctgctagtctgatagattat
ttaccagaagatggtgttgtgattttagatgaaatttctcgtattcaagaaacggcatca
catctcgaaacagaagaagcggaatggtatatatcacttcttggtgaaggaacaattatt
caggacttatctttctcccactcatttgaggagtttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttgcgccatatagcacatacacatccacaaaatattgtgaat
gtgacatgtaaaacaatgcaagatttccacggacagatgcagttgttaaaaactgaaatt
gataggtggaatgaagggcattttacgaccgttgtgctcggaacagatgatgaacgtgta
aaaaaactacaacatattttaagtgattatgatattgaggcagacattgtagaggcgaca
gatattttattgcctggaaggttacaaattgctgtgggtgatttacatgcagggtttgaa
atgccgatgcaaaagcttgttgttattactgaaaaggagctttttcataagaaggttaaa
aaatcacaacgtaagcaaaagttatctaacgctgaacgtattaaaagttattcggaatta
aaagttggagactatgtagttcatgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcataaagattatttaaatattaaatatcaaggtaatgat
aagttatatgttccaattgaacaaattgatcaagtgcaaaaatatgtaggatctgaaggt
aaggatccgaaagtttataaattaggcgggaatgattggaagaaggttaaaacgaaagtt
gaaaaatctgtacaagacattgcagatgacctaattaaattgtatgccgagcgcgaagct
tcaaaaggttatgcatacacaccagatacggcagaacaacaagaatttgaatcttctttc
ccatatcaagagacagaggatcaattacgttctattgacgaaattaagaaagatatggaa
cgtggacgtccgatggataggcttctttgtggtgacgtagggtatggaaagactgaagta
gccattcgtgcggcatttaaagcaattatggatgaaaaacaagttgcgattttagtaccg
acaaccattcttgcacaacaacactatgaaacaattcgagagcgttttcaagattacccg
attaatatagggttgctaagtagattccgtacgcggaaacaacaaaatgaaacgattaag
ggtttaaaagatggaacggtagatattgtaatcggaacacatcgtattttatccaaagat
gttacttataaagatttaggacttcttattattgatgaggaacaaagattcggtgttacg
cataaagaaaaaattaaacaattgaaagcaaatgttgacgttttaacgttaacggcaact
ccgattccacgtacacttcatatgtctatgcttggtgtgcgtgatttatctgtaattgag
acaccgccagagaataggttcccagtacaaacatatgtagtggagtataatccagcatta
atgcgagaagcgatagagcgagagcttgcaagaggaggtcaaatttacttcttatataac
cgtgtggaggatattgaaagaaaagcagatgaaatttcgatgttagttccagacgctcgt
gtaacatacgcacacgggaaaatgaatgaaagtgaattagagtctgttatgctatcgttt
ttagaggggcagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcacagttgtat
cagcttcgtggtcgtgttggacgttctaatcgcgtcgcgtatgcatactttgcatacaaa
cgcgataaagtgttatcggaagttgcagagaggcgtctgcaggcaattaaagagtttaca
gagcttggatctggtttcaaaattgcgatgagagatttatcaattcgtggtgcaggtaac
ttgttaggagcagaacaacatggatttattgattctgtcggatttgatctatattctcaa
atgctaaaagatgcaattgaacagcgcaggggaacagacggagttgaaaatacagttaat
gttgaaattgatttagaagtagatgcatatttaccagatgcttatatttcagatagtaaa
caaaaaattatgatgtataaacaatttagaggtgtttctgcaattgaggatattgaagag
ctgcaggaagagatgatagatagatttggtgattatccacaagaagttggttatttatta
caaatcgcaaatattaaagtgttagcaatgaaagaacaaattgagttaattaagcaaaat
aaatttgaagtaacgttcctgttttctgaacaagcaagccaaaatatcgatggtgggaaa
ttatttatgctagggaatagttttggtcgtatgattggtcttggtatggaagggtcacaa
ttgaaaattgttatgaaaacgaatggattagagacatcgaaatggttaacaattgctgaa
aatttattaaaaggcttaccagatgtaaaaaaagaagtaataaatgcctaa

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