Candidatus Bandiella numerosa: N3Z17_00120
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Entry
N3Z17_00120 CDS
T09014
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bnu
Candidatus Bandiella numerosa
Pathway
bnu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bnu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N3Z17_00120 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnu03021
]
N3Z17_00120 (rpoC)
03400 DNA repair and recombination proteins [BR:
bnu03400
]
N3Z17_00120 (rpoC)
Enzymes [BR:
bnu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N3Z17_00120 (rpoC)
Transcription machinery [BR:
bnu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N3Z17_00120 (rpoC)
DNA repair and recombination proteins [BR:
bnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N3Z17_00120 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Vsr
Motif
Other DBs
NCBI-ProteinID:
WHA04959
LinkDB
All DBs
Position
complement(19383..23492)
Genome browser
AA seq
1369 aa
AA seq
DB search
MFNYLNSQTNKDFDAIKISIASPDQIRSWSYGEVKRPDTVNYRTIKPENGGLFCSRIFGP
VKDYECLCGKYKRMKYRGTVCEKCGVEVTTSKVRRERMGHIELATPIVHIWFLRSLPSRI
CTLLDISLKKIEKVLYYDAYVISDPGVTNYEYGQLISEEDYYKAIEHYGEDSFEAGIGAE
VIKKMLKSIDLKEEKAKLRIELSKTNSETTRKKIVKRLNLVENFLESGNKLEWMVLEVLP
VIPPDLRPLVMLDGGRFATSDLNELYRRVLNRNNRLSRLLELKAPDIIIRNEKRMLQESV
DALFDNSRKSKVIKASNKRPLKSLADMLKGKHGRFRQNLLGKRVDYSGRSVIVVGADLKL
HQCGLPKRMALELMKPFIYSKLELYGISTTIKAAKKIVEEERPEVWDILDEVIKEHPVFL
NRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQLESRVL
MMSTNNILGSANGEPVIVPTQDIVLGIYYLSLQFENQKGEGMCFGSLSEVEHAVDAGKLS
IHAKIRFRIKLNSENEGKDSVIIDITPGRLFITELLPKESQIGYEHVNKIMTKKEISNLI
DVVYRSCGQKKTVIFADHLMGLGFKYACQSGISIGKDDIVVPESKSFHINNSLKKIREYE
EQYSDGLITSGERYNKAIDEWTRCTDVIASDMMKKLFDPNDPNNKYNTFESLNSIYIMSD
SGARGSPAQMRQLAGMRGLMTKPSGEIIETPIISNFKEGLNELEYFISTHGARKGLADTA
LKTANSGYLTRKLVDVAQDCIVIEDDCGTKHSILVRERIENGEVIIPLRELALGRVLAED
LYAPEKSSILVKKGKLIDESVMSVIEQSNIGALKIRSVLTCETKNGVCSSCYGRDLARGQ
IVNLGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAQKIASKSDIITSYSGSIKFENSTIIQ
NSAGTKINMSRNCELIILHGKKDEKFRCKVPYGAKVLFDDMDKVRAGDKIAEWDPFTLPI
MTEVTGYVSFVDLQDSVSVKEFQDDITGITNKVVIDAKQGSKTSNFRPRIVIKDSEGNPI
KLSNGSEARYFLPVNASISVYDNQKVEIGDILAKMPKESSKSRDITGGLPRVVELFEARQ
PKEVAVLSEIDGYVEYGQDYKFKRRLIVRSKDGEVKTEYFIPRGKHISVNEGDYVLKGEM
LLDGDPSPHDILRILGKEEFANYMIDEVQQVYKLQGVRINNKHIEVILKQMLKKVEITDP
GETTFIAGEQVDNEHFEQMNKKAKKEKYTPAQAVGILQGITKSSLQTNSFLSAASFQETI
KVLTEAAVSAKSDYLIGLKENVIVGRLIPAGTGFYMNRLKKKYNDVSTN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaattacttaaactcccaaactaataaagattttgacgctattaaaatatctata
gcaagtcctgatcaaattagatcatggtcctatggggaagttaaaaggccggatactgtg
aattacagaactataaaacctgaaaatggagggttgttttgttcgagaatttttggacca
gttaaagattatgagtgcctgtgtggtaaatataaaagaatgaaatacagaggtactgtt
tgtgaaaaatgtggtgttgaagtaactacatcaaaggttagaagagaaagaatggggcat
atcgagttggcaactcctattgtccatatttggtttttaagatcattgccatctagaata
tgtacattacttgatatcagtttaaagaaaatagaaaaagttctttattatgatgcgtat
gttataagtgatcctggtgttactaattacgagtatggtcaattaatttcagaagaggat
tattataaggcgatagagcattatggagaggatagttttgaagctggtataggcgctgag
gttataaaaaagatgctaaagagcattgatttaaaagaagaaaaagcgaaattaagaatt
gaattatcaaaaacgaattcagaaacaaccagaaagaaaatagttaagaggctaaattta
gttgaaaattttttagaatctgggaataaacttgagtggatggttctggaagttttgcca
gtcatacctccagatttaaggcctctggttatgcttgatggaggtagatttgccacatca
gatttgaatgaattatacagaagggtgcttaacagaaacaacagattaagcaggttactg
gaacttaaagcgccagatattattattcgcaatgaaaaaagaatgcttcaggaatctgtt
gatgcgttgtttgataatagtagaaaaagcaaagttattaaagcatcaaataagagacct
cttaagtcacttgcagatatgcttaagggtaaacatggtagatttagacagaatttatta
ggaaaaagggttgattattcaggtagatctgtaatcgtcgttggtgctgatttaaagctt
catcaatgtggattaccaaaaagaatggccttagaattgatgaagccgtttatatattca
aaattagagctttatggaatttccacaacaattaaggcagcgaaaaaaatagttgaagaa
gaaagacctgaggtttgggatattttggatgaagttattaaagagcatccagtatttttg
aatagagcaccaactcttcacagattgggtatacaggcttttgaaccgatacttattgag
ggaaaagcaattcaattgcatcctttggtttgtgctgcctttaacgctgactttgatggt
gaccaaatggctgttcacgttccactttcaatagaggcgcagttagagtcaagagtatta
atgatgtctactaataatattttaggatctgcaaatggagagcctgtaatcgttccaaca
caagatatcgttttaggtatctactatttgtcattgcaatttgaaaatcaaaaaggtgaa
ggcatgtgtttcggaagtttaagtgaagtagaacatgctgtggacgctgggaaattatca
attcacgcaaaaattagatttagaatcaaattaaattctgaaaatgagggaaaagactct
gtaataatagatattactcctggtagattgtttatcaccgagctattacctaaggaatct
caaattggctatgagcatgttaataaaatcatgaccaaaaaagaaatatcaaacttaata
gatgttgtttacagaagttgcggacagaaaaaaaccgtgatatttgccgatcatttaatg
ggtttaggttttaaatatgcttgtcaatcaggtatatcaattggtaaagacgacattgtt
gtgccagaaagcaaaagttttcatattaataactcacttaagaagattagagagtatgag
gagcaatattctgatggtctaattacgtctggcgaaagatacaacaaagctatagatgaa
tggactagatgtactgatgtaatagcgtcagatatgatgaaaaaattatttgatcctaat
gatccaaataataaatataatacttttgaatctttaaacagcatatatattatgtctgat
tctggagctagaggatcgccagctcaaatgagacaattagctggaatgagggggttgatg
actaagccttcaggtgaaattatcgagaccccaattatatctaattttaaagaaggattg
aatgaattagagtactttatttctactcacggtgcaagaaagggtcttgcagatacagcg
ctgaaaactgcgaattctggttatttaactagaaaattggtagatgttgctcaagattgt
attgtaattgaagatgattgcgggacgaagcattctattttagtgagagaaagaatagag
aatggagaggtgattatacctttaagagaacttgcgcttggtagagtattagcggaagat
ttatatgcgccagaaaagagctcaattttagttaaaaaaggcaagttaattgatgagagt
gtaatgtctgttattgagcaaagtaatataggggctctaaaaattagatccgtattaaca
tgcgaaactaaaaatggagtttgtagtagctgttatggaagagatttagcgagaggacaa
atagttaatttaggagaagctattggagtaattgctgcacagtctataggagaacctggt
actcagttaactatgagaacattccatattggtggagctgcgcaaaaaattgcgagtaaa
tctgatataattacttcctattctggctcaataaaatttgagaactctactattattcaa
aacagtgctggaactaaaattaacatgagtagaaattgtgaacttataatacttcatggc
aaaaaggatgagaaattcaggtgcaaagtgccttacggtgctaaagtattatttgatgat
atggataaagtaagagcaggcgataaaatagcagaatgggatccatttactcttcctatt
atgaccgaggttactggatacgtttcatttgtagacctgcaggattctgtatctgtaaaa
gagtttcaagatgacataacgggaattactaataaggttgtaatagatgctaagcaaggt
tcaaaaacctcaaattttcgaccaagaattgttatcaaagatagtgaaggaaatcctata
aaattgagtaacggttcagaagcaagatatttcttgcctgttaatgcaagcataagtgtt
tatgataaccaaaaagttgagattggtgatatattggcaaaaatgccgaaggaatcgtca
aaaagtagagatattactggtggtttgccaagggtggtagagttatttgaagctcgtcaa
cctaaggaggtagcggtgttaagtgagatagatggttatgttgagtatggacaggattat
aaatttaagaggcgattaatagtcagatcgaaagatggtgaagttaaaacagaatatttt
attcctaggggtaagcatatatctgtaaatgaaggtgattacgtgttgaaaggtgagatg
ttacttgatggtgacccatcgcctcatgatattttacgtattcttgggaaagaggaattc
gcaaattatatgattgatgaagtacagcaggtttataaattacagggcgtaagaattaat
aataagcatattgaggttatattaaagcaaatgcttaaaaaagtggaaataacagatccg
ggtgaaacaacatttattgctggagaacaagtagataacgagcattttgagcaaatgaat
aaaaaagctaaaaaagagaaatacacacctgctcaggctgtaggaattttacaaggaata
acaaaatcctcattgcaaacgaattctttcttatctgctgcatcattccaagaaactata
aaagtgttaactgaggctgcagtttctgctaaatcagattatctaattggattaaaagaa
aatgtaatagttggaagattaattcctgcagggactggattttatatgaatagattaaag
aaaaaatacaacgacgttagcacaaattaa
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