Candidatus Bandiella numerosa: N3Z17_01140
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Entry
N3Z17_01140 CDS
T09014
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bnu
Candidatus Bandiella numerosa
Pathway
bnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N3Z17_01140 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnu03021
]
N3Z17_01140 (rho)
03019 Messenger RNA biogenesis [BR:
bnu03019
]
N3Z17_01140 (rho)
Transcription machinery [BR:
bnu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
N3Z17_01140 (rho)
Messenger RNA biogenesis [BR:
bnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N3Z17_01140 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
OB_RNB
AAA_25
AAA
NACHT
AAA_22
S1CSD-TOTE-2
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
WHA05582
LinkDB
All DBs
Position
complement(249317..250729)
Genome browser
AA seq
470 aa
AA seq
DB search
MRLRINTDKASSIAKENTDNDLIDDTVKQEVNIKQEVNNEEDEILRLKDFKTKNPKELIL
LAESLLVKNPNNFNKHDLIFAILKAYAEKGCKIMGEGVLEILPDGYGFLRSPESNYIPCS
DDVYISPNQIRRFGLRTGDTVTGLMRAPKKEERYFAITNVQTINFQSTEGSKYRVLFEDL
TPLYPEEKIALEFLDGTKSTLSGRVIDIVSPLGKGQRALVVAPPRTGKTVLMQSIAHAIA
KNYPDIYLIVLSIGERPEEVTDMLRSVKGEVVSSTFDEPSHRHVQLAEIVIEKARRLVES
KKDVVVLLDSITRLARAYNDIAPSSGKVLSGGVDSNALQRPKKFFGAARNIEEGGSLTII
ATALVETGSRMDEVIFEEFKGTGNAEIVLDRKIADKRVFPAIDIAKSGTRKEELLIDKAN
LAKAWVIRKILNPMNTTEAIEFLINKMKYSKNNDEFFKQMNTYSPSKKQE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaggttaagaattaatactgataaagctagctcaatagcgaaagaaaatacggataat
gacttaatagatgatactgtaaaacaggaagtaaatataaaacaggaagtgaataatgaa
gaagatgaaattttaagattaaaagattttaagactaaaaatcctaaggagcttatctta
ttagcagaatcacttttagtaaaaaatcctaataactttaataaacatgatttgatattt
gcaattttaaaagcatatgcagaaaaaggttgcaaaattatgggagaaggggtcctagag
attttaccagatggttacggatttttaagatctccagaatcgaattatataccgtgttca
gatgatgtatatatttcgccaaatcaaattagaaggtttggcttaagaacaggagacact
gtaacaggactaatgagagctcctaaaaaagaggaaagatatttcgcaattaccaatgtg
caaacaattaattttcaatctacagaaggaagcaaatatagagttttatttgaggattta
actccactttatcccgaagaaaaaattgctttagaatttttagatggcactaaaagcact
ttaagtggtagggtgatagatatcgtgtcaccgttaggtaaggggcaaagggcattagtt
gtcgctcctccaagaacaggtaaaacagtgctgatgcagagtatagcgcatgcaatagca
aaaaattacccagatatttatctaattgtactttcaataggagaaagacccgaggaggta
acagatatgttgagatctgtaaaaggagaggtagtgagttctacttttgatgagccatct
cataggcatgttcaattggcagagatagtaatagaaaaagcaagaaggttggtagaatca
aaaaaagatgtagtagtgctactggattctatcactagattggctagagcttacaatgac
attgctccgtcctcaggtaaagttttaagtggaggggtagattcaaacgctttgcaaagg
ccgaagaaattttttggagcagcaagaaatatcgaagaaggaggttctcttacaataatt
gcaacggcattggtagaaactggttctaggatggatgaagtaatttttgaagaattcaaa
ggtacaggaaatgcagaaatcgtactagatagaaaaattgcagataaacgggtttttcca
gctatagatatagcaaaatctggtactaggaaggaagaattattgattgataaagctaat
ttagctaaagcttgggtgattagaaaaatacttaaccctatgaatacaactgaagctata
gaatttttaatcaataaaatgaaatattcaaaaaataatgatgaattttttaagcagatg
aatacttatagtccgagtaaaaaacaagaatag
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