Candidatus Bandiella numerosa: N3Z17_02960
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Entry
N3Z17_02960 CDS
T09014
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bnu
Candidatus Bandiella numerosa
Pathway
bnu02020
Two-component system
bnu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bnu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N3Z17_02960 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N3Z17_02960 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnu03021
]
N3Z17_02960 (rpoN)
Transcription machinery [BR:
bnu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N3Z17_02960 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
MarR
HTH_5
HTH_6
Motif
Other DBs
NCBI-ProteinID:
WHA05484
LinkDB
All DBs
Position
609910..611256
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AA seq
448 aa
AA seq
DB search
MQGQKQIQKLSQKMVLSRNMQQSINILSMQTIDLKNFIEKEIIENPFLEMDDSMNFENNS
INQVSIHKERSGGDNNFNQEELLSKLVDKSLTLKEYIVSQINLTLLNNDDKLIAYYMTDM
LDENGYLRKSEKSIAEELKIPAQKIEAVIKILKTFDPLGVFSINLEECLKMQAIEKNIYD
EKFQKLLDNLDLLAKLDFKSLKKACEISEENLQNLISELKKLNPKPGRDFITTGVQMAIP
EIMIGGNKEYGFYPVLNDNAIPNCFYQNYVNSKHLNSDEKEFCLKRKNTAIEIVNALSKR
KKLLLNVAEKILEFQYEFFANGVNFLKPLVITDIAKKLEVNESTISRISNKFIETPHGVF
EIKFFFSSKIKAEFTESHHSSTSVKNKIKNVISGEENNNILSDEAVSNILKEHYNILISR
RTVAKYRESMKIPSSAIRKRLRKMSVQK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaggacaaaaacaaatacaaaaactatctcaaaaaatggttttatccaggaatatg
caacaatctataaatattcttagcatgcagacaattgaccttaaaaattttattgaaaaa
gaaattatagaaaacccatttttagaaatggatgatagtatgaattttgaaaacaactcc
attaatcaagtgtcaattcataaagagcgatctggaggagacaataattttaaccaagag
gaattgctttctaaattagtagataaatctctaactttaaaagagtacattgtgtctcag
ataaatctaactttactaaataatgatgataaattaattgcttattatatgacagatatg
cttgatgaaaatggatatctcagaaaatcagaaaaaagcattgcggaagaattaaaaatt
ccagctcaaaaaattgaggctgtcattaaaatattaaaaacatttgatccgttaggggtt
ttttcaataaatttggaagaatgtttaaaaatgcaggcaatcgaaaagaatatatatgat
gagaaatttcaaaaactcctagataatttagatttacttgctaagttggatttcaaatcc
ttaaaaaaggcctgtgaaatcagtgaggagaatttacaaaatttaatttcggagcttaaa
aagctcaatccaaaacctggtagagatttcatcactactggtgttcaaatggcaatacca
gaaattatgattggaggtaataaagagtatggtttttatccagttttgaatgataacgca
attccgaattgtttttatcaaaattatgttaacagcaaacatctaaattctgatgaaaaa
gagttttgtttaaaaaggaaaaatacagcaattgaaattgtcaatgcattaagtaaaagg
aaaaaattgttactaaatgtagctgaaaaaatattagaatttcagtatgaattttttgca
aatggggtgaattttttaaaacctttggtaattacagatatagcaaaaaagcttgaagta
aatgaaagtactataagtagaataagtaataaatttattgagacacctcatggagtattt
gaaataaaatttttcttttcttcaaaaatcaaagcggagtttacagaaagccatcactcc
agtacctcggttaaaaacaagataaaaaatgtaatttcaggtgaagaaaataataatata
ttgtcagatgaggctgtaagtaatatactgaaagagcattataacattttgatttcacgc
agaactgtggctaaatatagagagtctatgaaaattccatcatcagcaattagaaaaagg
ctaagaaaaatgagtgtgcaaaaatga
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