Borrelia nietonii: bhYOR_000627
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Entry
bhYOR_000627 CDS
T09752
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bny
Borrelia nietonii
Pathway
bny03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
bhYOR_000627 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bny03400
]
bhYOR_000627 (mfd)
Enzymes [BR:
bny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
bhYOR_000627 (mfd)
DNA repair and recombination proteins [BR:
bny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
bhYOR_000627 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
UB2H
Cas3-like_C_2
TsaE
DUF5068
Motif
Other DBs
NCBI-ProteinID:
UPA09315
LinkDB
All DBs
Position
complement(655817..659185)
Genome browser
AA seq
1122 aa
AA seq
DB search
MNIEKELTTRLNDNRNLKKIQQLIKENLPFTLVGHEGFFEAFLINKIKEYNGNNKIILIV
NNENIANTLKDDLMKITDKIYELNYFSPLVYKGIGSKSTIFSERVKFLINFYKNNPGIYI
VSLKSLLSKIPTKENLFKNIYKIQTSKLINIKNLESNLIKLGYEKTMRVTLPGEFTIKGE
IIDIHSFNKTEPIRISLHTDTIKEIKYFNPLTQLKKGNEIPEFDIIPKKEIIWNNENITK
LKHYIKENEYKKLFEQLETKYHARAEEIFYPLIGNTYLSQEINEDTLTINFKIPNLQEEI
KKIYKEYEKLYSQAIESGEKTIAPKEIFINLNDLKLKTNIFFVKTPANTQTEELVEFEIE
SGRRFFSNIALAKEEIQNWLNNGFKVIIAAESSSQKEKLKYIFKDLPKIKIEVLKISSSL
IINKEKIAIILESDLFNRRQKINKVFESSKTKPIDSFIEVEKNSHVVHINHGIGIFKQIK
RIKTSLLEKDYIEIEYADNEKLFIPIEQTHLIQRYIGNETQNIKLDKISSKTWEKKKAHT
KKRIDAIADQLVSLYSARESTKGFQYPQDNEWQLLFESEFAYDETPDQLTAISEIKQDMM
SLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGTKQVAILSPTTILTEQHFNTFKKRFKNFP
IKIAMISRFIKKSKEREIIKNLETGEIDIIIGTHKILSKKITYKNLGLIIIDEEQRFGVR
EKEKLKEIKVSVDCLTLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIETYVETFNELL
IKHAIEHELSRDGQVFFVHHNIQELDLIKTMLEKIVPYARIATIHARLTGDQIESIMHDF
INKSYQVLLATTIIENGIDIENANTIIINNANRFGLAQLYQLRGRVGRSSQKAFAYFLYK
ENSNLNESAIERLRAISEFSELGAGFQIAMKDMEIRGVGNLLGKEQHGEIESIGLDYYLT
MLNKAIEKRMGKDSKEDKITIEINYNGFIPDSYVNNEQDKISIYKKISVIQSEEENNKIR
AEIHDRFGPIPEELNTLLILSELKLLAKKLNITSLKERNGLLEIEYLDTNSIPVYRIMQI
IKDNPTTLKINPEYKNSVFLNLKNVKGSEKINCIYRHLNLLL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaaaagaattaactaccagactaaatgacaatcgaaatttaaaaaaaata
caacaactcattaaagaaaatctaccctttacactagtaggacatgaaggattttttgaa
gcttttttaataaacaaaataaaggaatataacggtaataataaaattatattaatagtt
aacaatgaaaatattgcaaatacactcaaagatgacttaatgaaaattacagataaaata
tatgaacttaattatttcagtcctcttgtatataaaggcatcggctcaaaaagtacaatc
tttagcgaacgagtaaaattcctaatcaatttttataaaaataatcctgggatctacatt
gtttcattaaaatctctacttagtaaaatccctacaaaagaaaatttatttaaaaatatt
tataagattcagacaagcaagttaataaacataaaaaatcttgaaagcaaccttataaaa
ctaggatatgaaaaaacaatgagagttacattacctggagaatttacaataaagggtgaa
ataatagacatacactcatttaataagacagaaccaataagaatttcactgcatactgac
acaataaaagaaatcaaatattttaatcccttaacccaattaaaaaaaggcaatgaaatc
cccgaatttgatataattcctaaaaaggaaatcatttggaataacgaaaacataaccaaa
ttaaaacactacataaaagaaaatgaatataaaaaattatttgaacaacttgaaacaaaa
tatcatgcaagagcagaagaaatattttatccgttaataggaaacacatacctaagtcaa
gaaataaatgaagatacacttactataaatttcaaaataccaaatttgcaagaagagatc
aaaaaaatctacaaagagtatgaaaaactttatagccaagcaatagagtcaggagagaaa
acaattgcaccaaaagaaattttcataaacttgaatgatttaaaattaaaaactaatatt
ttcttcgtcaaaactcctgcaaatacacaaacagaagaacttgtagaatttgaaattgag
agtgggcgtagatttttttcaaatattgcacttgcaaaggaagaaatacaaaactggcta
aacaacggatttaaagtaattattgcagcagaatctagttcacaaaaagaaaaattaaaa
tacatcttcaaagatctgccaaaaatcaaaattgaagttttaaaaatatcaagctcactt
ataataaacaaagaaaaaatagccattatccttgaatcagatctatttaatagaagacaa
aaaataaataaagttttcgaatcatcaaaaacaaaacctattgattcatttattgaagtt
gaaaaaaatagtcatgtcgttcacatcaaccatggaattggaatatttaagcagatcaaa
agaatcaaaacaagtcttcttgaaaaagattatattgaaattgaatatgcggataatgaa
aaattatttattccaattgagcaaacacaccttattcaaaggtatattggaaatgaaact
caaaatataaaattagataaaatcagctcaaaaacctgggaaaagaaaaaagctcataca
aagaaaagaattgatgcaattgccgatcagcttgtttcactctattcagcaagagaaagc
actaagggatttcaatatcctcaagataatgaatggcaattattatttgaatcagaattt
gcatacgatgaaactccagatcaactaacagcaatatcagaaatcaagcaagatatgatg
agtttaaaagtaatggatagacttttatgcggtgatgttggatttggtaaaaccgaagtc
gcaatgagggctgcattcaaagctgtcatgggcacaaaacaggtagcaatactctctcca
acaacaattcttacagaacaacacttcaatacattcaagaaaagatttaaaaactttcca
attaaaattgcaatgataagtagatttataaaaaaatcaaaagaaagggaaattattaaa
aacttagaaacgggcgaaatcgacataataattggaacacacaaaatactctctaagaaa
ataacatataaaaacttaggactcattataattgatgaagaacaaagattcggggtacga
gaaaaggaaaaactaaaggaaataaaagtctctgttgactgtcttaccctatcagcaact
ccaattccgcgatctcttcatatgtcattaatcaaactaagagacatttcggttttaaaa
accccacctcaaaacagaattaaaatagaaacttatgtagaaacattcaacgagctttta
attaaacatgcaatagagcatgaactctcccgagatggacaagtattttttgtgcatcat
aatattcaagaactagatttaataaaaacaatgctagaaaaaatagtcccttatgcaaga
attgcaaccattcatgcaagacttacaggtgaccaaattgaaagtatcatgcatgatttc
ataaataaatcatatcaagtactattagcaacaacaataattgaaaacggaatagatatt
gaaaatgcaaatacaataataattaacaatgcaaacagatttggacttgcacaactatac
caactaaggggcagagttggcagaagttcgcagaaagcctttgcttatttcttatataaa
gaaaactcaaacttaaacgaaagtgccattgaaagattaagagcaatatctgaattttca
gaacttggagcaggatttcaaattgcaatgaaagatatggaaataagaggtgttggaaac
ctacttgggaaagaacaacatggagagatcgaatctattggactggattattacttaaca
atgttaaataaagcaattgaaaaacgcatgggaaaagattctaaggaagataaaatcact
attgaaatcaactacaatggatttattcccgatagctatgtaaataatgaacaagacaaa
atatcaatttacaaaaaaatttcagtaattcaaagcgaagaagaaaataacaaaataaga
gctgaaattcatgaccgatttggaccaattccagaagagcttaataccttacttatatta
tcagaactgaaactacttgccaaaaaactcaatattacgagccttaaagaaagaaatgga
ttacttgaaatcgaatatttagatacaaatagtattcctgtttacaggataatgcaaatc
ataaaagataatcctactacattgaaaataaatccagaatataaaaattcagtttttcta
aacctaaaaaatgttaaaggatcagaaaaaataaattgcatatatagacatttgaatcta
ttattataa
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