Borrelia nietonii: bhYOR_000718
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Entry
bhYOR_000718 CDS
T09752
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bny
Borrelia nietonii
Pathway
bny02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bny00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
bhYOR_000718 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bny03021
]
bhYOR_000718 (rpoD)
Transcription machinery [BR:
bny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
bhYOR_000718 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
UPA09565
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Position
753874..755742
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AA seq
622 aa
AA seq
DB search
MQAFKKKNSKVIKAILSYLGDKKVITFEDLSTFLSGNMLEPENIDYMYGVLENEGISLIN
EKMEPDICSIDEFDEASKLDSQCMILDDSVQSDDELDDKLDEFEDETLDKEDFSSGYIKS
GLLKDSNSEDPIRLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNEGLVIENYYN
LVNAIYSRVDKEEFFKKEKEREKDNNFDYYNKKKRITSFYKASLKSFQDRLVRYIENKHR
LYELGEDIFEESITNERVRIKEMLKSVPLYQEELRIFSDDYIDSASKIKDLKRQQKSILD
RLKIDKVRNLRILGRDLAISERRERIEKALNIREDLIKEQITEAQLAQKELERIEMYYEY
PMDKIISMSEEILKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLI
KAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQV
LGKDPTDEELSARLGWDLKKVKTVKNVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPAK
HTSFVVLQDQIRSVLGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESK
ALRRLKNPKKTQKLKDYLEDLN
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggcttttaagaagaagaattcaaaagtaataaaggctatcttaagttatttggga
gacaaaaaggtaattacttttgaggacttatccacttttttatcagggaatatgttggaa
cctgagaatattgattatatgtatggagttcttgagaatgaagggataagtttaattaat
gaaaagatggaaccagatatttgtagcattgatgaatttgatgaagcaagtaaacttgat
agtcagtgtatgatattagatgattctgttcagagtgatgatgagcttgatgataaatta
gatgaatttgaggatgagactttagacaaggaagattttagttcagggtatattaagagt
ggtttattaaaagatagtaattctgaagatccgataagactttacttaaaagaaatagga
aaagaatttttattaactggaaatcaagaggttgagcttgcaaagcagatggattctggt
gagagtataattgagaatattcttaaaaatgaaggactcgttatagagaactattataat
ttagttaatgccatttattcaagagtagataaagaagagttttttaaaaaagaaaaagaa
agagaaaaagataataattttgattattataacaaaaaaaaaaggatcacttccttttat
aaagcttcattaaaatcatttcaggatcgtttggtaagatatattgaaaataagcataga
ttatatgagcttggagaagatatttttgaagagagtattactaatgagagagttcgtata
aaagaaatgcttaaatctgttcctttatatcaagaggaattgcgcattttttcagatgat
tacattgattctgctagcaaaataaaggatctaaagaggcaacaaaagtccatattggat
agattaaagatagataaagtacgaaatcttagaattcttgggagagatttagctatttct
gagagacgggagaggatagagaaagctttaaatattcgagaggatctaattaaagagcaa
attacagaagctcaacttgctcaaaaggagcttgagagaattgagatgtattatgaatat
ccaatggataagataataagcatgtcggaagaaatccttaagggcaagcagatgatgcag
catgcaaaagatcagctaattaaggctaacttaagacttgtggtaagtattgctaaaaag
tatgctaatagaggactgcatttttttgatcttgttcaagagggtaatattggtctaatt
aaagcagttgaaaaatttgagtataagcgaggctttaagttttctacttatgctacatgg
tggattcgtcaagcaataacaagatcaatctcagatcaggcgcgtaccattcgtgtgcct
gtgcatatgattgagcagataaatagactaaatagagaaacaaggtatttaattcaagtg
ttaggtaaagatccaacggatgaggagttgtcagctagacttgggtgggatcttaaaaag
gtaaaaactgtaaaaaatgtctcaagagagcctgtttcgcttgaaacaccaattggagaa
gaagaagattctgttcttagtgattttattgaggataaggcgataaaaaatccagcaaag
catacatcttttgtggtcttacaagatcagataaggtcagttcttggtactcttccagaa
agagaacaagaagttgttaagatgagatttggtcttgaagatggatattctttaactctt
gaagaagttggactgcattttaacgttacaagagagagaattagacagattgagtctaag
gctttaaggcgacttaaaaatcctaagaaaactcaaaaacttaaagattatttagaagat
ttaaattga
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