Bacteroides ovatus: Bovatus_00797
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Entry
Bovatus_00797 CDS
T04113
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
boa
Bacteroides ovatus
Pathway
boa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bovatus_00797 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boa03019
]
Bovatus_00797 (cshA_1)
Enzymes [BR:
boa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bovatus_00797 (cshA_1)
Messenger RNA biogenesis [BR:
boa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bovatus_00797 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
AAA_7
Utp25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALJ45457
UniProt:
A0A1Y4Q2N8
LinkDB
All DBs
Position
998916..1000184
Genome browser
AA seq
422 aa
AA seq
DB search
MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL
NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK
GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE
RQTIMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKIIQAAYVCYENQKLGIIRSLFM
DEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVA
TDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNFKSIE
NFLEKEIYKIPIPEELGEAPEYKPRSFSKGKGGNYKRKDFRGKRNNNNGGKRNNRPSPPR
QN
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttccgaactacaattaaatgcaaatgtgcttgaggcgcttgatgccatgcga
tttgacgaatgtacgcctatacaggagcaggcaattccaatcatacttgagggtaaagat
ttgatcgcagtagcacagacaggaacaggtaaaacggccgcgtttctactgcctgtattg
aataaattatctgaaggtaaacatccggaagatgcgattaattgtgtcatcatgtctcct
acccgggaattggcccaacagatcgaccagcaaatggaagggttttcctatttcatgccg
gtatcgagtgttgccgtatacggtggaaatgatggaatattgttcgaacaacagaaaaaa
ggactcactttaggagctgatgttgttattgctactcccggacgtctgatcgcccattta
agccttggatatgtagatctttccaaggtttcttattttattctggatgaagcagaccgg
atgctcgacatgggattctatgaagatatcatgcaaattgcgaaatatctgccgaaggaa
cgacagacaatcatgttttctgcaacaatgcctgcaaagattcagcaattggcaaacaca
atcttaaataatccgtcagagataaagctcgcagtttccaaacctgcagaaaagattatt
caggcagcatacgtttgctacgaaaatcaaaagctgggaatcatacgcagtctttttatg
gatgaagttccggaacgtgtgattgtctttgcatcttctaaaatcaaggtcaaggaagta
gccaaggctttgaaatccatgaaactgaacgtaggggaaatgcattcggatctggaacag
gctcaacgggaaactgttatgcatgagtttaaagccggacgaatcaatatattggtagct
acggacatcgttgcacgtggtatagatatcgatgatatccgcctggttatcaacttcgac
gtgcctcacgacagcgaagactatgtacaccgtatcggacgtacagcacgtgccaacaat
gatggtgtagcacttacgttcatcagcgagaaagaacaaagtaacttcaaaagtattgag
aactttctggaaaaagagatttataaaattcctattcctgaagaattgggagaagctccg
gaatacaaaccgcgttcttttagcaagggcaagggtggcaactacaaaagaaaagatttc
cggggaaaaaggaataataataacggaggaaagagaaataaccgtccgtctccccccaga
caaaattaa
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