Bacteroides ovatus: Bovatus_01503
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Entry
Bovatus_01503 CDS
T04113
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
boa
Bacteroides ovatus
Brite
KEGG Orthology (KO) [BR:
boa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
boa03016
]
Bovatus_01503 (rtcB_2)
Enzymes [BR:
boa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Bovatus_01503 (rtcB_2)
Transfer RNA biogenesis [BR:
boa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Bovatus_01503 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
Bovatus_01503 (rtcB_2)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
TAF1_subA
Motif
Other DBs
NCBI-ProteinID:
ALJ46147
UniProt:
A0A395W611
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All DBs
Position
complement(1803082..1804479)
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AA seq
465 aa
AA seq
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MGIRLKDLSKLGYRDNVARSLVVDIVSKHCKYDTKEQIEMTLSDILEHPESYKNNEIWNK
LAERLSPTIIAKEFIAYDLLDEPLMYKTYGGKFIETLAKQQMNLAMRLPVTVAGALMPDA
HAGYGLPIGGVLATDNVVIPYAVGVDIGCRMSLTVFDASADFLKRYTYQMKEALKDFTHF
GMDGGLGFEQEHEVLDREEFRLTPLLRDLHGKAVRQLGSSGGGNHFVEFGEIALQENNVL
NLPEGNYLALLSHSGSRGLGAAIAKHYSLLAREVCRLPREAQHFAWLDLNTEAGQEYWMS
MDLAGDYARACHERIHLNLAKALGLKPLANVNNHHNFAWREEIAPGRMAIVHRKGATPAQ
KGQAGLIPGSMATAGYLVCGKGMEAALNSASHGAGRAMSRQKAKDSFTQSALKKLLSQAG
VTLIGGSVEEMPLAYKDIDRVMYTQETLVEVQGKFMPRIVRMNKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacgattaaaagatttaagcaaactgggataccgggataatgttgcccgtagt
ctggtagtggacattgtgagcaaacattgcaaatacgacactaaagaacagattgaaatg
acattgagcgatatactcgagcatcccgaatcttacaaaaataatgaaatttggaataag
ctggccgaacgcctttcgcctactatcatagcgaaagagtttatagcttatgatttattg
gatgagccgttgatgtataaaacctatggaggtaaatttatcgaaacgcttgccaaacaa
cagatgaacctggctatgcgcttacctgtaacggtggccggagcattgatgcctgacgct
catgccggatacgggttacctatcggtggagtgcttgctacggataatgtagtgattccg
tatgccgtaggcgttgatatcggttgtcggatgagcctgacggtatttgatgccagcgct
gacttcctgaaacgatatacctatcagatgaaagaagccttgaaagatttcactcatttc
ggtatggatggcggattgggttttgagcaagaacatgaggtgttggatagggaagaattc
cgtttgacgcctttgttgagagatttgcatggaaaggcagtacgtcaactggggagttcc
ggtggtggcaatcattttgtggagttcggcgagatcgctctgcaagaaaataacgtgttg
aatcttccagaaggaaattatctggcattgttgtcacattccggttcacgaggattggga
gctgccattgccaaacattacagcctgttggcacgtgaagtgtgcaggcttccccgtgaa
gcacagcattttgcctggctggatttaaacactgaagcggggcaggagtattggatgagt
atggatctggcaggtgattatgcccgtgcctgtcatgagcgaattcatttgaatttggcg
aaagcattagggttgaagccgctcgctaatgtcaacaaccatcataacttcgcttggaga
gaggaaatagcaccggggcgtatggcaatcgtgcatcgcaaaggagctactccggcacag
aaaggacaagcgggattgattcccggtagcatggctactgcaggttatctggtttgtggc
aaagggatggaagctgctttaaattcggcttctcatggagccggcagggcgatgtcccgc
cagaaggcaaaagatagttttacgcaatcggctttgaagaaactactgtcgcaggcggga
gtgactttgattggtgggagcgtggaagaaatgccactggcatataaagatattgacaga
gtgatgtatacacaggaaacgctggtggaagtgcagggtaaatttatgcctcgcatcgtt
cgaatgaataaggagtga
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