Bacteroides ovatus: Bovatus_03385
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Entry
Bovatus_03385 CDS
T04113
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
boa
Bacteroides ovatus
Pathway
boa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bovatus_03385 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boa03019
]
Bovatus_03385 (cshA_2)
03009 Ribosome biogenesis [BR:
boa03009
]
Bovatus_03385 (cshA_2)
Enzymes [BR:
boa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bovatus_03385 (cshA_2)
Messenger RNA biogenesis [BR:
boa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bovatus_03385 (cshA_2)
Ribosome biogenesis [BR:
boa03009
]
Prokaryotic type
rRNA helicases
Bovatus_03385 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Ig_Tie2_1
RecG_N
Motif
Other DBs
NCBI-ProteinID:
ALJ47992
UniProt:
A0A515ITC3
LinkDB
All DBs
Position
complement(4275849..4277783)
Genome browser
AA seq
644 aa
AA seq
DB search
MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LLQQIDVKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT
LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRDIERI
ISKKFIVGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIADFMPEIYRKLEWLSKEDLIKR
MVSHEFNRFAEYYRNRAEIEVPTDIRGERTGRGDRKEGGFEKRSRQAAPGFNRLFINLGK
TDSFFPSDLIGLLNSNTRGRIELGRIDLMQNYSFFEVPEKEATNVIKALNRAKWNGRKVV
VEIAGAGEESGKGRGNGSNERKGNKRFGGKSDERAPRYENKDRKPKDASAKDSKSTKKDK
PSRADRGYSDARGPKKKDDWQEFFKDKEPDFSEEGWARRKPKKK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagcttggcgtttctccggagatacgtagagcaattgaagaaatg
ggatacgagaatcccatgccggtacaagaagaagtgattccgtaccttttaggagaaaat
aatgatgtagtagctcttgcacagacaggaacaggtaaaacagccgcattcggtttgccc
ttgctccaacagattgacgtaaaaaacagaattccacaatcgcttatcctctgccctacc
cgcgagctttgtctccagatagcaggagatttgaatgactattccaaatacattgacgga
ctaaaagtattacctgtatatggtggttcttccattgacagccagatacgcagcctcaaa
cgaggggtacacatcattgtagctacccccggacgcctgctggacctgatggagcgcaaa
accgtatctctatctaccatccacaatgtggtaatggatgaagccgacgaaatgcttaat
atgggattcacagaaagcatcaacgccattctggctgatgtaccgcaggagcgcaacacc
ctattgttttccgcaacaatgagtccggaaatcgcacgcatttccaaaaattacctacgc
aatgcgaaagaaatcactattggccgcaagaatgaaagcaccaacaacgttaaacacgtt
gtttataccgtacaggctaaggacaaatacgaagctttaaagcgtatcgtcgattactac
ccacaaatatacggtattattttctgccgtacccgtaaagaaactcaagaaattgccgac
aaattaatgcaagaaggctacaatgccgattctttgcatggtgaactttctcaagcacaa
cgggatgctgttatgcagaaattccgcatccgcaatttgcaactgctcgtggcaactgac
gtggctgcccgcggacttgatgtagacgatctgacacatgttatcaattacggattacca
gacgatacagagagttatacacatcgcagcggacgtacaggacgtgccggaaagacagga
acttccatagccatcatcaatcttcgtgaaaaaggaaagatgagagatatcgaacggatt
atcagcaaaaaattcattgtcggagaaatgccaacagcagcaggaatctgtcagaagcag
ctgattaaggttattgatgatctcgaaaaagtaaaagtaaacgaggaagagattgctgac
tttatgccggaaatctaccgtaaactggaatggttgagcaaagaggacctgattaaacga
atggtttctcacgaattcaaccgtttcgccgagtattatcgcaaccgtgcagaaatagaa
gtaccgactgacatcagaggagaacgtaccggacggggtgaccgcaaagaaggtggtttc
gaaaaaagaagccgccaagctgcaccgggctttaaccgcctgtttatcaatttgggtaaa
acagacagtttcttccccagcgaccttatcggcttattgaacagcaacacacggggacgt
atcgagttgggacgcattgacctaatgcagaactattctttctttgaggtaccggaaaag
gaagcgacaaatgtaatcaaggcgctgaatagggctaaatggaacggacgcaaggtagtt
gttgagattgccggcgccggtgaagaaagcggaaaaggacgtggaaacggttcaaatgag
cgcaagggaaataaacgattcggcggcaaaagcgacgaacgtgcaccgcgctatgagaat
aaggatagaaaaccgaaagatgcttctgcaaaagactcaaagtcaacaaaaaaagataaa
cctagtcgtgctgatcggggatactctgatgctcgcggtccgaagaagaaagatgactgg
caagagttttttaaagataaagaacctgacttcagcgaagaaggatgggcacgtagaaaa
cctaagaagaaataa
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