Bombella sp. ESL0368: GN304_04185
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Entry
GN304_04185 CDS
T06372
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bob
Bombella sp. ESL0368
Pathway
bob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN304_04185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bob03019
]
GN304_04185
Enzymes [BR:
bob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GN304_04185
Messenger RNA biogenesis [BR:
bob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GN304_04185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_16
NACHT
Motif
Other DBs
NCBI-ProteinID:
QGT75024
LinkDB
All DBs
Position
complement(957737..958894)
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AA seq
385 aa
AA seq
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MTQTDFTDLGLSDELAQAARKAGMARPTPIQQQGIPPLLAGRDVLLPGQTGTGKTAAFVL
PALQKLASLKQDGTAGSIPRVLILEPTRDLAMQTAGVCRQLGRQLPLRTRVICGGVPRDQ
QARSLEQGADIIVATHGRLLDFVEKGELSLEHIIYLVLDEADRLLDEEFSASMTALVPYI
ADRPQTIFCSATLPEPVMTLAKQVTKDPVRVEPGEEEVTPRRIRQQALFITEAQKDTLLL
TLLERSGAQAKDGTGRSIIFTKTKQKADSVAKLLRKTGYRAIALHGGQTQGDRKKTLDRY
QNQTGSILVTTDIAARGLDIDDIQLVVNMDLPQTPELYIHRIGRTARAGKQGRAVTFATL
EERTRLRDIEKHIQYRIRIITTETL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaacagattttacagacctcggcctttcagacgagctggcacaggccgcccgg
aaagcaggcatggccaggccaacccccatacagcagcagggcatccccccccttctggcg
gggcgtgacgttctcctgcccggccagaccggcacgggcaagacggcagctttcgtcctg
cccgccctccagaaactggccagcctcaaacaggacggaactgccgggtccattccacgg
gtcctgatcctagagccaacccgtgacctcgccatgcagacagccggggtctgccgtcag
ctgggccgtcaacttcccctccgcacgcgggtcatctgtggcggcgtgccccgtgaccag
caggcacgctcactggaacaaggagccgacattatcgtcgccacgcatggccgtcttctg
gacttcgtggagaaaggtgaactgtcactggaacacatcatctatctggtgctggatgaa
gccgaccgtcttctggatgaagaattctccgccagcatgacggctctcgtgccctacatc
gccgatcggccccagaccatcttctgctccgccacgctgccggaacctgtcatgacactg
gccaaacaggtcacgaaagaccccgtgcgggtggaacccggcgaggaagaggtcacgcca
cggcgcatccgccagcaggccctgttcatcaccgaggcgcagaaagacaccctgctcctg
acacttctggaacggtcaggagcacaagccaaagacggaacgggtcgaagcatcatcttc
acgaagacgaagcagaaagccgattccgtcgcaaaactcctgagaaaaaccggatacagg
gccattgccctgcatggcgggcagacgcagggagaccgcaaaaagactctggaccgctac
cagaatcagaccgggtccatcctcgtgacaacggacattgccgcccgcggacttgatatt
gacgacatccagctcgtcgtgaacatggacctgccccagacgccagaactctacattcac
cgcatcggccggacagcccgcgcgggaaagcaggggcgggccgtcacgttcgccacgctg
gaagaacggacccgcctgcgggatattgagaagcacatccagtaccgcatccgcatcatc
acgacggaaacgctatag
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