Bombella sp. ESL0368: GN304_06380
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Entry
GN304_06380 CDS
T06372
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bob
Bombella sp. ESL0368
Pathway
bob02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bob00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GN304_06380 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bob03021
]
GN304_06380 (rpoD)
Transcription machinery [BR:
bob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GN304_06380 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
SLATT_6
FTA4
Motif
Other DBs
NCBI-ProteinID:
QGT75392
LinkDB
All DBs
Position
complement(1425737..1427680)
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AA seq
647 aa
AA seq
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MATKSASGSDRNAPEQDSSPLDVQSSAVKKLIAKGRSAGHITFDELNAILPQDKMSSEQI
EDVMAALSEMGIQVVESVDKEEEEGSSEDRSGNDDASDDEANGGNVDAVAASRTDDPVRM
YLREMGAVELLSREGEIAIAKRIEAGRGEMIGGLCRSPLTFQSILGWYEQLKNETLLLRE
VIDLEASQSDPESPEDMEDLTSEEENEPDDESEDSDGDGSGSEGSGLSLSALEEKLRPDI
MLLFEAFEPLYQKLIKMQSQRLKVLLEGRSPSDTDEKKYNKLRTELVALVERMRLHNNRI
EELVQSLKAHVQKLNAVEGRMLRLAETCKIPREDFMDRYRHQELAPDWIEGICQLPGKGW
KTLTSKHLPALEKMRDEVAALAKETGLPVDEFRLVYQTISRGERDSTRAKKEMIEANLRL
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
AKTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPIS
LETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRVLASLTPREERVLRMRFGIG
MNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDD
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaatcagcctctggatcagacaggaatgcaccagagcaggacagttctccg
cttgatgtgcagtcctcggccgtcaagaagctgattgccaaggggcggtctgccggtcac
atcacgtttgatgaactgaatgccatcctcccgcaggacaagatgtcttccgagcagatc
gaggacgtcatggctgccctctccgaaatggggatacaggtggtcgaaagcgtggacaag
gaggaagaagagggcagtagcgaagaccgttctggcaatgacgacgcctcggatgacgag
gcgaatggtggtaatgtcgatgctgttgcggccagccggacggatgaccctgtccgcatg
tatctccgtgagatgggagcggtggagctcctttcccgtgagggtgagattgccattgcc
aagcgtattgaggccgggcgtggagagatgatcggagggctgtgccgcagcccgctgacc
ttccagtccatcctgggctggtatgagcagctcaagaacgagacgctgctcctgcgtgag
gtgatcgatcttgaggccagccagagcgaccctgaatcgccagaggatatggaagacctg
acatccgaggaagagaacgaaccggatgacgagtctgaggacagtgatggggatggcagt
ggcagcgaggggagtggcctgtcactctctgcgctggaggaaaaactccgcccggacatc
atgctgctgtttgaagccttcgagccgctttatcagaagctgataaagatgcagagccag
cgtctcaaggtcctgctggaagggcggtccccgtccgatacggacgagaagaaatataac
aagctgcggacggagcttgtcgctcttgtggagcggatgcgcctgcacaataatcgtatt
gaggagctggtccagtccctgaaggctcatgtgcagaagctgaatgccgttgaggggcgg
atgctgcgtctggcagaaacatgcaagattccccgtgaagatttcatggaccggtatcgt
catcaggagctggcgccggactggatcgaaggcatctgccagcttcccggcaaaggctgg
aagaccctgacaagcaagcacctccccgcccttgagaaaatgagggacgaagtggctgcc
ctggccaaggaaactggcctgccggtggatgagttccgtctggtctatcagaccatttcc
cgtggggaacgtgattccacccgggcaaagaaggagatgattgaggccaatctgcggctg
gtgatctccattgccaagaaatacaccaatcgtggccttcagttccttgacctgatccag
gaagggaacatcggcctgatgaaggcggtagacaagtttgaatatcgccgtggctacaag
ttctccacctatgcgacatggtggatccgtcaggcgattacccgctccattgccgatcag
gccaagacaatccgtatccccgtgcacatgatcgagacgatcaacaagctggtacggaca
tcccggcagatgctgcatgaaattggccgtgagcccgccccggaagaacttgctgaaaag
ctggggatgccgctggagaaagtccgcaaggtcctcaagatcgccaaggaaccgatttcc
cttgagacaccgatcggtgatgaggaagacagccaccttggtgacttcattgaggacaag
accgccgtcattccgctggatgccgccatacagacgaacctgcgtgaggcaacgacccgt
gttctggcctctctgacgcctcgtgaggagcgtgtgctgcgtatgcgctttggtatcggc
atgaacaccgatcacacgctggaggaagtgggccagcagttcaatgtgacccgtgagcgt
atccgccagattgaggccaaggcgctccgcaagctcaagcatccgagccgcagccgcaag
ctgcgctccttccttgatgattga
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