Brevipalpus obovatus: 141858405
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Entry
141858405 CDS
T11568
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bobo
Brevipalpus obovatus
Pathway
bobo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bobo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141858405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bobo03041
]
141858405
Enzymes [BR:
bobo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141858405
Spliceosome [BR:
bobo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141858405
Complex B
141858405
Complex C
U2 SnRNP specific factors
141858405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141858405
NCBI-ProteinID:
XP_074605241
LinkDB
All DBs
Position
1:32712641..32715968
Genome browser
AA seq
727 aa
AA seq
DB search
MNRSRFNEPSASGDYSNVAPPKNINKRKGYNALGEEQDQDFNTFQHRRLDKRRLDNDDSY
WDQEDEDDQKGETKTGNHLSDDEEEEDPLDAFMAGIEKEVKQTEKKVDVKKDKEVPSNIR
MDIEGEEDIQESYYRYMKDNPKAGLYILQDDDDDLAEYDEEGNLVVNRKRLRHIDPLPPI
DHSTIQYSNFERNFHVEHEEIKALDEDKVRELRGKLGITVLGKEPPKPCSSFAHFGFDEN
LTKAVIKMGYSQPTPIQCQAIPIAMSGRDILGIAKTGSGKTAAYLWPMLIHIMDQSELKP
GQGPIGLILAPTRELTQQIHTEAKKFAKAYGLKVACCFGGGSKWEQSKDLQDGAEIVVAT
PGRMIDLIKSKATNLERVTMLVLDEADRMFDMGFGAQIMSICNHVRPDRQTLLFSATFKK
RVERLAREVLTDPIKIIQGELGVANEDVTQIVMVMKDGPSKWAWLTSHMVEFTSNGSVLI
FVTRKDNSEELANNLKSLGIELALIHGDMNQIDRNNAIGKFKRKEVEVMVATDVAARGLD
ITHVKTVVNYDVARDIDTHTHRIGRTGRAGDKDGIAYTLVTEADKDFAGHLVRNLEGANQ
NVPEDLMSLAMQSTWFAKSRFKRGKGRKSNNNYSRANVRSRPGLGASESYLRDDDSSPHS
NRLTHPSSSDSSKSNQSDRIAVMRDAFRAQFQASFRPATDKEMSGRESSKTLTPDNSKSA
RKKSRWE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgctcgcgttttaatgagccttctgcttctggtgattattcaaacgttgctcct
ccaaaaaatattaacaagcgaaagggttacaatgccttgggtgaagaacaagatcaagat
ttcaacacttttcagcatcgaagactcgacaagagacgcctcgataacgatgacagctat
tgggatcaagaagatgaggatgatcaaaaaggtgaaactaagacaggaaatcatctttcg
gacgatgaggaggaggaagatcctcttgatgcattcatggcgggaattgagaaagaagtc
aagcaaacagagaaaaaagtcgacgttaaaaaggataaagaagttccctccaacatacga
atggacatcgaaggcgaagaagatattcaagagtcctactatcggtatatgaaagataat
ccaaaggctgggctgtatatattacaagatgatgatgatgatctcgcagagtatgatgag
gaaggaaatcttgtcgttaatcgaaaaagacttcggcacattgaccctctacctcctatt
gatcattctacgattcaatattccaacttcgaaaggaattttcacgttgagcatgaggaa
atcaaggcattagatgaagacaaagtccgagagctacgaggaaaattaggcattaccgtt
ctcggaaaggaacctcccaagccatgcagcagctttgctcattttggttttgatgaaaat
cttacaaaagcagtcataaaaatgggatattctcagccaactccgatccagtgtcaggcc
atacctatagccatgtctggtagagacattctcggtattgccaaaactggtagcggtaaa
acagcagcatatttatggccaatgttgattcatatcatggatcaatcagaactgaaacct
ggacaaggtcctattggacttattctagctcccactcgtgaactgacacaacaaattcac
acagaagcgaagaaatttgctaaagcatatggtttaaaagttgcctgttgttttggaggt
ggatcaaagtgggaacaatcaaaagatttacaggatggagcagaaatagttgttgctaca
cctggaagaatgatcgatttgattaaaagtaaagccactaatctagaaagggtaaccatg
ttggttcttgatgaagcagatagaatgttcgatatgggttttggagctcaaattatgtcg
atatgcaatcatgttcgaccggatcgtcaaactctattgttttcagccacatttaaaaag
agagtcgagcgattggcccgggaggtccttacagatcccataaaaattattcaaggagag
ctaggagtcgctaatgaagatgttacacagattgtcatggttatgaaagatgggccctcc
aagtgggcatggttaacctctcatatggtggaatttacttcaaatggatcagttttaatt
ttcgttacaagaaaagacaattcagaggaactagcgaacaatttgaagtctttagggatt
gagctggcgctcattcatggagatatgaatcagatagatcgtaacaacgctatcggcaag
ttcaaaaggaaagaagttgaggttatggtcgccaccgatgttgccgcccgaggattggac
ataactcatgttaaaacggtagtaaactatgatgtagctcgagatatcgatacacatacc
caccgaattgggagaactggtcgtgctggtgacaaagatggaattgcatatacattggta
acagaagctgacaaggatttcgctggccatcttgtgcgtaaccttgaaggtgccaaccag
aatgtacctgaagatctaatgtctctagccatgcaatctacgtggtttgccaaatcaaga
ttcaagagaggcaagggccgaaaatcaaacaataattattcccgggctaatgttcgctct
cgaccgggtcttggtgctagtgagagctacctacgcgacgatgacagttcacctcattca
aatcgacttactcatccttcatcatccgactcatccaagagcaaccaatctgatcgtata
gccgttatgagagatgcctttcgtgctcaatttcaagcaagttttaggccagcaacagat
aaagagatgagcggacgtgaatcttccaagacactcactccagacaattcaaaatccgca
cgcaagaaaagcagatgggaatga
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