Burkholderia oklahomensis C6786: BG90_1053
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Entry
BG90_1053 CDS
T03861
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
boc
Burkholderia oklahomensis C6786
Pathway
boc02020
Two-component system
boc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BG90_1053 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BG90_1053 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boc03021
]
BG90_1053 (rpoN)
Transcription machinery [BR:
boc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BG90_1053 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_Crp_2
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AJX33687
LinkDB
All DBs
Position
I:1184277..1185785
Genome browser
AA seq
502 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENEDDWIASPLRV
AADGSVIAQAPASSAPEPMQGASNNTSATNERTERDEPAGVDEYDSYSADSGDASQWNLD
DFGRSPSASDDDDLPPMQIHETTTSLRDHLAAQLRVTQASPRDRALVLFLIESLDDDGYL
TASLEEVLADLPAELEIDLDELNAALALLHSFDPAGVGARSPSECLKLQLLRLNPSPTRA
LALDIVSQHLELLAARDFTRLRKQLKASDDELRDAHALIRSLEPFPGAAYGKAEADYVVP
DIIVKKAGQSWQAELNPEVVPRLRINHLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQ
QRFETILRVAQAIVERQRNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPF
GTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagcctccaactccgcctgtcgcagcatctcgcgctcaccccccagcttcag
cagtcgatccggctgctgcagctgtcgacgctcgaactgcagcaggaagtcgcgatggcg
gtcgcgcagaatccgcttctcgaaaacgaagacgactggatcgcgagcccgctgcgcgtc
gcggccgacggctcggtgatcgcgcaggcgcccgcatcgtctgcgcccgagccgatgcaa
ggcgcatcgaacaacacgagtgcgacgaatgagcgcaccgagcgcgacgagcctgcaggc
gtcgacgaatacgacagctattcggccgacagcggcgacgcgagccagtggaacctcgac
gacttcggccgctcgccctccgcttccgacgacgacgatctgccgccgatgcagatccac
gaaacgacgacgtcgctgcgcgaccatctcgccgcgcaactgcgcgtcacgcaagcgagc
ccgcgcgatcgcgcgctggtgctgttcctgatcgaatcgctcgacgacgacggctatctg
accgcgtcgctcgaagaagtgctcgccgatctgccggcggaactcgagatcgacctcgac
gaactgaacgcggcgctcgcgctgctgcacagcttcgatcctgcaggcgtcggcgcgcgc
tccccatccgagtgcctgaagctgcagttgctgcggctgaatccgtccccgacgcgcgcg
ctcgcgctcgacatcgtgtcgcagcatctcgaactgctcgccgcacgcgatttcacgcgc
ctgcgcaagcaactgaaggcatccgacgacgagctgcgcgacgcgcacgcgctcatccgc
tcgctcgagcctttccccggcgcggcgtacggcaaggccgaagcggattacgtggtgccc
gacatcatcgtgaagaaggcggggcagagctggcaggcggaactgaatccggaagtcgtg
ccgcggctgcggatcaaccatctgtacgcgaacatcctgcgcaacagccgaggcgatccg
agcgcgggttcgctcaagcagcaactgcaggaagcgcgctggctgatcaagaatattcag
cagcgattcgagacgatcctgcgcgtcgcgcaagcgattgtcgaacgtcagaggaatttc
ttcgcgcacggcgaaattgcgatgcgccccttggttttgcgggaaatagctgatacgctg
ggcctacacgagtcgactgtctcccgtgtgacaaccggcaagtacatgctgaccccgttc
ggcacgcttgaatttaagtacttcttcggatcgcacgtttcgacagacaccggaggtgcc
gcgtcgtcgacggcaatccgcgccctcatcaaacaactgataggagccgaagaccccaaa
tcccctctttcggatagtcgcatagccgaactgctagcggaacaagggttcgtggtcgcg
cgccgcacggttgccaaatatcgcgaagccctcaagatcccggcggtgaatctgcgcaag
tctctgtag
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