Burkholderia oklahomensis C6786: BG90_1794
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Entry
BG90_1794 CDS
T03861
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
boc
Burkholderia oklahomensis C6786
Pathway
boc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BG90_1794 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boc03021
]
BG90_1794 (rpoC)
03400 DNA repair and recombination proteins [BR:
boc03400
]
BG90_1794 (rpoC)
Enzymes [BR:
boc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BG90_1794 (rpoC)
Transcription machinery [BR:
boc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BG90_1794 (rpoC)
DNA repair and recombination proteins [BR:
boc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BG90_1794 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AJX31093
LinkDB
All DBs
Position
I:1988665..1992903
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINAKGEGLSFTGVSEVLRAYENK
EVELASRVNVRITEMVRNEDTSEGAPQFVPKISLYATTVGRAILSEILPAGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYESGTLLDETAVEEIERLGIDEVRVRTALTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDIGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYDNILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEL
SDRERFDQIAAEEAFEFGTPAAPAEEPQHPAE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaagaagaagtttttgacgcgatc
aagattggtctggcttcgccggacaagatccgttcgtggtcgttcggcgaggtgaagaag
ccggagacgatcaactaccgcacgttcaagccggagcgcgacggtctgttctgcgcgaag
atcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgtgaa
cggatgggccacatcgagctggcgtcgcccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatacgtggtgatcgatccgggcatgacgccgctgaaggcgcgtcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgcgccgaaatg
ggcgcggaaggcgtgcgcgagctgctgcgcgcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtcctcgaggcattccagcgctcgggcatcaagcccgagtggatgatcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctcgacggcggccgtttc
gcgacgtcggacctgaacgacctgtaccgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgccggaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggccgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagctgcaccagtgcggtctgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagctcgaagtgatgggcgtcgcgacgaccatcaaggccgcgaagaaggaa
gtcgagaaccagacgcccgtcgtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgcgcgccgacgctgcaccgtctcggcatccaggcgttcgagccggtt
ctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgcttgcgtcgaacaacgtgctgttcccggcgaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaatgcg
aagggcgaaggcctgtcgttcaccggcgtgtcggaagtgctccgcgcgtacgagaacaag
gaagtcgagctcgcatcgcgcgtgaacgtgcggatcaccgaaatggtccgcaacgaggac
acgtcggaaggcgcgccgcagttcgtgccgaagatctcgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggaaatcctgcctgccggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctcatcaacacggcgttccgcaagtgcggtctgcgc
gcgacggtggtcttcgccgatcagttgatgcagtcgggcttccgcctcgcgacgcgcgcc
ggcatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagttgtcgacggagccggtgacggaccgcgacggcaacgaaacgcgc
caggaatcgttcaactcgatctacatgatggccgactcgggcgcccggggttcggcggtg
cagattcgtcagctggccggtatgcgcggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacggaagggtctggctgatacggcactgaagacggcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctcgtcgtcgtcgaggacgattgcggc
acgtccaacggcgtcgcgatgaaggcgctcgtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccgcatcctcggccgcgtcgcggtggcggacgtcgtgaatccggagacgcaggaa
acgctgtacgaatccggcacgctgctcgacgaaacggcggtcgaagagatcgagcgcctc
ggcatcgacgaagtgcgcgtgcgcacggcgctgacctgcgaaacgcgctacggcctgtgc
gcgtcgtgctacggccgtgacctcggccgtggctcgctcgtgaacgtcggcgaagcggtc
ggcgtgatcgcggcgcagtcgatcggcgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcttcgtcggtcgaagcgaagagcaac
ggtaccgtgcgcttcacggcgacgatgcgttatgtcacgaacgcgaagggcgagcagatc
gtcatctcgcgctcgggcgaggcgatgatcacggacgatatcggccgggagcgcgagcgc
cacaaggtgccgtacggcgcgacgctgctgcagctcgacggtgcgcagatcaaggccggt
acgcagctggccacgtgggatccgctgacgcgtccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtgacc
ggtctgtcgaccctcgtcgtgatcgacgtgaagcgccgcggttcgcaagcttcgaagagc
gtgcgcccgcaggtgaagctgctcgacgcgaacggcgaagaagtgaagatcccgggcacg
gagcacgcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggtcag
caagtgcaggtgggtgaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgcgac
attaccggcggtctgccgcgcgtggccgagctgttcgaagcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcacgggtacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggatctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggtgctggtccacgatgctcaggtcgtcaacaagggcgaaatgatcgtggacggtccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgcttcgccgcgtgcagatcgtcgacaacggcgatacgcgtttc
atccctggcgagcaggtcgagcgttcggacatgctggacgagaacgatcgcatgatcgcc
gaggacaagcgtccggcaacgtacgacaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgactcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggcaggtacgggcctcgcgttccacaaggcgcgcaaggcgaaggaactg
tcggatcgcgaacgtttcgaccagatcgcagcggaagaggcgttcgagttcggcacgccg
gcggcgcccgccgaagagccgcagcatccggcggagtaa
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integrated database retrieval system
