Burkholderia oklahomensis C6786: BG90_2641
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Entry
BG90_2641 CDS
T03861
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
boc
Burkholderia oklahomensis C6786
Pathway
boc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG90_2641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boc03019
]
BG90_2641
03009 Ribosome biogenesis [BR:
boc03009
]
BG90_2641
Enzymes [BR:
boc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BG90_2641
Messenger RNA biogenesis [BR:
boc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BG90_2641
Ribosome biogenesis [BR:
boc03009
]
Prokaryotic type
rRNA processing factors
BG90_2641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJX30430
LinkDB
All DBs
Position
I:complement(2901825..2905001)
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEEAKPRQEAAVKGITPER
PAPSAAPQRQPAPAAAPVAAAPASGGFVKWLKNLFGMQPAAVPAPAPAAQEPAARPARER
GERGEKAERGGDRNRNRRGSGGAQQAGGRDQAAAGGGRGQAPRAEREAKETREPREGREA
REGREGREGREGREGREGRGGRDNREGREARETREPREPRERAETADAAEAPRSERRERG
ERRKPVPHVATLETVNRGESAHAEPAEQPAHALGAEAGVEADSNARDGEERRRRRRGRRG
GRRERDDETAGAAQAAEAGEGVTAETAAYAAEAPQGVAPVADHEPQHAVQAGAGVAAVAA
AAVAAEAIAHVESDVKVEPQAAAEAPAASAEPIAAAPARAAEAPAEAAPAATHAEPAPVE
SAHVQAAPVETAPAEAAPAEAPAAEASEAAAPAVAPAPIPEPAPAVEPHPAPAAVAPAEA
SVPHEPAAVAEAQAPSAAPAEAVAPAAVAAPVAAASSASLETVLESAGLVWVNTDTDKLR
AAQAAAAQIAPSVRAPRERKPLPPVDTTPMQQVETTHR
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgatatcgacatcgaaaccgccggacgcgaacaacgcaaaggcaat
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaactac
ggcgaagatcgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcattcaggacgcgctgcgcgaaggtcaggagctgatc
gtccaggtcgagaaggaggagcgcggcaacaagggcgcggcgctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggagctgcgcgagacgatggcgcagcttcagatcccc
gacggcatgagcatgatcgcccgcacggcgggcatcggccgcagcgccgaggaattgcaa
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
catcccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtccccctcttctcccgcttccagatcgagcaccagatcgagacggcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgtgcgacgaagggcgcggacatcgaggagacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcgcgccagctccgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggagtcggcgaagagccagcgtgaagtcgag
cagcgtctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggcgctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaggcgatgaaggagaacaccgcggcgatccac
tgccaggtgcccgtcgaggtgaccgccttcctgctcaacgagaagcgtcaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcgtcgtgctgatcccgaacaagcatctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaagcgaagccgcgccaggaagcggccgtcaagggcatcacgcccgaacgc
cccgcaccgagcgccgcgccgcagcgccagcccgcaccggcggcggcgcctgtcgccgcc
gcgccggcaagcggcggcttcgtcaagtggctgaagaacctgttcggcatgcagccggcc
gcggtgcccgcaccggcgcccgctgcccaggaaccggccgcgcgtccggcgcgcgaacgc
ggcgaacgcggcgagaaggccgagcgcggcggcgatcgcaaccgcaaccgtcgcggcagc
ggcggcgcgcagcaggcaggcggacgcgaccaggccgcggcaggcggcggacgcggtcag
gccccgcgcgccgagcgcgaagccaaggaaacccgcgaaccgcgcgaaggccgcgaggca
cgtgaaggtcgggaaggtcgggaaggtcgggaaggccgggaaggccgggaaggccgcggc
ggccgggacaatcgcgaaggccgcgaagcacgcgaaacccgcgagccgcgtgagccgcgc
gagcgcgcggagacggccgatgccgcggaagcgccgcgcagcgagcgccgtgaacgcggc
gagcgccgcaagccggtcccgcacgtcgcgacgctcgaaaccgtgaaccgcggcgaaagt
gcccacgcggagccggccgagcagccggctcacgcgctcggcgcggaagccggcgtcgaa
gcggattcgaacgcccgcgacggcgaggaacgccgccgtcgccgccgcggtcgccgcggc
ggccgccgcgagcgcgacgacgaaaccgcaggcgcagcacaagcggcggaagccggcgaa
ggcgtgacggccgaaacggccgcatacgcagccgaagcgccgcagggcgtcgcgccggtc
gccgaccacgaaccgcagcacgccgtacaagcgggcgcaggcgtggcggcggttgctgcc
gcggcagtcgccgcggaagcgatcgctcacgtcgagagcgacgtgaaggtcgagccgcaa
gcggccgctgaagcgcctgccgcttcggccgagccgatcgccgcggcgccggctcgagcc
gccgaagcaccggcggaagccgctccggctgcgacgcatgccgaaccggctccggtcgaa
agcgcgcacgtgcaagccgctccggtcgaaactgcgcccgctgaagccgcgccggccgaa
gcgcctgccgcagaagcgtccgaagccgccgccccggcggttgctccggccccgatcccc
gagccggccccggccgtcgagccgcatcccgcgcccgccgcagtcgcccctgccgaggca
agcgtcccgcacgagccggccgccgtcgccgaggcacaagcgccgtcggctgcccccgcc
gaggccgtcgcaccggctgcggtagcagccccggtcgcggccgcgtcgagcgcgagcctc
gaaacggtgctcgaatcggccggcctcgtctgggtcaacacggacacggacaagctgcgc
gcggcgcaggccgccgccgcgcaaatcgcgccgtccgtccgtgcgccgcgcgaacgcaag
ccgctgccgcccgtcgacacgacgccgatgcagcaagtcgagacgacgcaccgctga
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