Burkholderia oklahomensis C6786: BG90_2782
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Entry
BG90_2782 CDS
T03861
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
boc
Burkholderia oklahomensis C6786
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boc03019
]
BG90_2782 (hrpA)
Enzymes [BR:
boc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BG90_2782 (hrpA)
Messenger RNA biogenesis [BR:
boc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BG90_2782 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_23
NACHT
AAA_19
T2SSE
nSTAND3
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AJX31971
LinkDB
All DBs
Position
I:3060665..3064807
Genome browser
AA seq
1380 aa
AA seq
DB search
MSNVPKSPAQKRAGTPGEPRPAGAGAGRPPRPPRTAPAQERAPSAERRESVPQAARPPRA
RVAPNPVPPITFPESLPVSGRRDEIARAIADHPVVIVCGETGSGKTTQLPKICLALGRGV
GAGGAGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTDGI
LLAETQTDPLLTAYDTLIIDEAHERSLNIDFLLGYLKQILPKRPDLKLIVTSATIDADRF
ARHFGSDERPAPVIEVSGRLYPVEVRYRPIADDRPAAVRHAEGAASGRDRAKTAREAERD
LMDGIVDAVDELCREGPGDVLVFLAGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQE
RVFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIESISQAAA
NQRAGRCGRVADGICIRLYEESDFAARVRFTDPEILRSSLASVILRMKSLHLSAIESFPF
IEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQALREM
LVIASALSVQDPRDRPLDAQEQADQAHRRFADERSEFLQWLKIWAWFEEAVAHKKSNRQL
VDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNIGFK
ADDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIERIGA
HLLKKSLSEPHWEKRPAQVSAFERATLYGLTVYHRRRVAFGRQDPARARELFIRGALVGG
EFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIYAFYDQTVPAGIHTGVAFERWY
RDEVKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRATMAGVEMALSYHFEPGAPR
DGVTLAVPLFALNQVDARRAEWLVPGMLKEKVQLLLKSLPQKLRRHCVPLPEYAAGFVER
VGAERFGAGGLVEGLIADIRGETQIATKTSDFKLETLPAHLFMNFKVIDEHGRQLAMGRN
LAQLRAELGAQAQQHFQKIAAAATLAPAGEGMGMATAAAATATAGARPGAHGGASPRAAA
QSAAQAGAGAAEAGATALYENLTTWNFGKLPELLEIRRRGETLFGYPALVDRGAHCDVEV
FDSPEEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQYMSVGTQDELRDQLIAT
ALDRACLQDPLPADDASFHARRDEGRSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPF
PAAHADMQGQLAALVGKRFVVDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQFAELQ
PLAQHYQRAVAQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgcaaaaacgtgcgggcacgccgggcgagccgcgg
cccgcgggggcgggggcgggccggccgccgcgtccgccgcggacggcgcccgcgcaggag
cgcgcgccgagcgccgagcgccgcgaatccgttccccaggccgcccggccgccgcgtgcg
cgcgtcgcgccgaatcccgttccgccgatcacgtttcccgagagcctgcccgtatcgggc
cggcgcgacgagatcgcgcgcgcgattgccgatcacccggtcgtgatcgtctgcggcgag
acgggctcgggcaagacgacccagctcccgaagatctgcctcgcgctcggccgcggcgtc
ggcgcgggcggcgcgggcctgatcggccacacgcagccgcggcggctcgcggcgtcgtcg
acggggcgccgcatcgccgaggagctcggcacgccgttcggcgaagtggtcggctacaag
gtgcggttcaccgacaacctcgcgccgggcgcgtccgtcaagctgatgacggacggcatc
ctgctcgccgagacgcagaccgatccgctcctcacggcgtacgacacgctgatcatcgac
gaggcgcatgagcgcagcctcaacatcgacttcctgctcggctatctgaagcagatcctg
ccgaagcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgccgatcgcttc
gcgcgccatttcggcagcgacgagcggcccgcgcccgtgatcgaggtgagcgggcggctg
tatccggtcgaagtccgctaccggccgatcgccgacgaccggccggccgccgtgcggcac
gcggagggcgcggcgtccggccgcgaccgcgcgaagaccgcgcgcgaggcggagcgcgac
ctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgaaggcccgggcgacgtg
ctcgtgttcctggccggcgagcgcgagatccgcgacgcggccgaggcgctgcgcaagcac
catccgccgcacaccgaaatcctgccgctgttcgcgcggctgtcggcggccgagcaggag
cgcgtgttcaagccgtcgaacgcgcgccggatcgtgctcgcgacgaacgtcgccgagacg
tcgctcacggtgccgggcatccgctacgtcgtcgatacgggcttggcgcgcgtgaagcgc
tattcgtatcggaacaaggtcgagcagttgcagatcgagtcgatctcgcaggcggccgcg
aaccagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgtctctatgaa
gagagcgacttcgccgctcgcgtgcgcttcaccgatccggaaatcctgcgctcgtcgctc
gcgtcggtgatcctgcggatgaagtcgctgcatctgtcggcgatcgagtcgtttccgttc
atcgagccgccgcccggccgcgcgatcgcggacggctaccagttgctgaacgagctcggc
gcggtcgacgacgacaacgcgctcaccccgctcggccgcgagctcgcgcggctgccgctc
gatccgcgcgtcggccggatgattctcgccgcgcgcgaccagcaggcattgcgggaaatg
ctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgatcgcccgctcgacgcgcag
gagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgaattcctccagtgg
ctgaagatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaaccggcagctc
gtcgacgcgtgccggcagaacttcctgtcgcatctgcggctgcgcgaatggcgcgacgtc
cactcgcagcttctgaccgtcgtgcgcgagcacggctggcggctcaacgaggccgatgcg
acgttcgagcagatccacctgtcgctcttgacgggccttctcggcaacatcggcttcaag
gccgacgacgagccgcactacctcggcgcgcgcgggatcaagttccatctgtggccgggc
tccgcgctcgtgaagaaggcgggacgctgggtgatggcggccgagctcgtcgagacgagc
cggctgtacgcgcgttgcatcgcgaagatcgagccggaatggatcgagcggatcggcgcg
cacctgctgaagaagtcgctgtcggagccgcactgggagaagcgccccgcgcaggtttcc
gcgttcgagcgcgcgacgctgtacgggctcaccgtctatcaccggcggcgcgtcgcgttc
ggccggcaggatccggcgcgggcgcgcgagctgttcatccgcggcgcgctcgtcggcggc
gagttcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgccgacatcgag
cagctcgagcacaagtcgcgccggcaggacgtgctcgtcgacgacgagctgatctacgcg
ttctacgatcagacggttccggcgggcatccacacgggcgtcgcgttcgagcgctggtat
cgcgacgaggtgaagaagagcggccagccggaagacaagctgcgcctgctgtatctgtcg
cgcgacgacctgatgcgccacgaggcggccggcgtgacgaccgacctgttcccgaagcgc
gcgacgatggcgggcgtcgagatggcgctgtcctatcacttcgagcccggcgcgccgcgc
gacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcgcgccgcgcc
gagtggctcgtgccggggatgctgaaggagaaggtgcagctgttgctgaagtcgctgccg
cagaagctgcgccgccactgcgtgccgctgcccgagtatgcggcgggcttcgtcgagcgc
gtgggcgccgagcgcttcggcgcgggcggcctcgtcgaggggctgatcgccgacatccgc
ggagagacgcagatcgcgacgaagacgtccgatttcaagctcgagacgctgcccgcgcac
ctgttcatgaacttcaaggtgatcgacgagcacggccggcagctcgcgatggggcgcaat
ctcgcgcaactgcgtgcggagctgggcgcgcaggcgcagcagcacttccagaagatcgcc
gccgccgcgacgctggcgccggcgggcgagggcatgggcatggccacggcggcggcggcg
acggcgactgccggcgcacggccgggcgcgcacggcggcgcgtcgccgcgcgccgccgcg
caatccgcggcgcaagcgggcgcgggggcggccgaagccggcgcgaccgcgctctacgag
aatctgacgacctggaatttcggcaagctgcccgagctgctcgagatccgccggcgcggc
gagacgctgttcggctatccggcgctcgtcgatcgcggcgcgcattgcgacgtcgaagtg
ttcgattcgcccgaggaagcggcgcggatccaccgcgcgggcctcaggcgcctgttcgcg
ctgcagttgaaggagccgatcaagtatctggagaagaacctgccggggctgcgcgagatg
gcgatgcagtacatgtcggtcggcacgcaggacgagttgcgcgaccagctgatcgcgacg
gcgctcgaccgcgcatgcctgcaggacccgctgcccgccgacgacgcgagcttccacgcg
cgccgcgacgagggcaggagccgcctcaacctgctcgcgcaggagattgcgcggctcgtc
gggcagatcctcgccgaatacgcggggctcgcgaagaagctcgcgcaggcgaaaccgttt
ccggccgcgcacgcggacatgcagggccagctcgcggcgctcgtcggcaagcgcttcgtc
gtcgacacgccttacgcgcagcttgcgcacttcccgcgctacctgaaggggatcgcgctg
cggatcgacaagctgaaggccgatcccgcgcgcgacgcgcgccagttcgccgagctgcag
ccgctcgcgcagcactatcagcgggcggtcgcgcagcgcggcggcgtcgcggacgcgcgg
ctcgccgagtttcgctggctcctcgaagagctgcggatctcgctcttcgcgcaggagctg
cgcacgccgatgcccgtgtcggtcaagcggctctacaaagtgtgggagtcgatgcagcgc
tga
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