Burkholderia oklahomensis C6786: BG90_311
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Entry
BG90_311 CDS
T03861
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
boc
Burkholderia oklahomensis C6786
Pathway
boc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BG90_311 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boc03400
]
BG90_311 (recD)
Enzymes [BR:
boc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BG90_311 (recD)
DNA repair and recombination proteins [BR:
boc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BG90_311 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
SH3_13
Helicase_RecD
SLFN-g3_helicase
RecD_N
DEAD
MukB
UvrD_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJX31472
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All DBs
Position
I:complement(323097..325715)
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AA seq
872 aa
AA seq
DB search
MSSVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRLGAPAAAARWAARAAFAA
SRATAAGHVCVSLHALAQRYDEPFTDVRDALAASGVIAFGGIARGGECPLVVDRDGRLYL
ARYFEYETRLATALVARARSGDAAAGGAGELEPEALGERLVRYFGPQKERGVDWQRVAAL
VALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPDLRIALAAPTGKAAQRMQEALHARAG
SLPAELAMRLPQTSYTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLD
ALAPNTRLVLLGDKDQLAAVEAGAVFAELSAQPAFSATACATIARALGIDEAEFVAALPD
GFVRGAAGIEKAGAGAGARAAVIDASAAARASATAAAPAARATATAAAKAAAEPAPRAGR
RGGARESKRAADDAQGSLFAFDDESAPGDDASGNDMPGGDTTGDAQQNRRDTPDVHASSN
VQDVYGMGGAQRIRARADNGFPADLPRDASAAERAAWIDAGELAWLDNASVSSLEDAATN
AASGEWRIASAAGAGARVRADALTGMSADAGAETGASASMMMSAEAASSAASAVAPLTDC
VVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTADDAAARFCDDGGATLSAATIER
IAQGFAGYAAALRDALATHSPDPLPLFDVLNRFRVLCATRTGARGADEVNARVAAEVRRA
VRVPLAIGAHWFAGRPVMVTRNDYALGLFNGDIGIALPDARGALRVWFRGADGRARPVSP
AALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARSRVQVIGSRA
VLALAIATRTARDSGLAARIADALRARPEGMR
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagctcggtcgacgaacgcttcgcgtggacgggcggcctggccgaccgtctgcccgag
ccggccgatttcggcctcgcgctcgccgaaggcttcgcgcgccggatcggcatgctgtcg
cgccgcctcggcgcacctgccgcggcggcgcgctgggcggcgcgcgcggcgttcgccgcg
agccgcgcgacggcggcggggcacgtgtgcgtgtcgctgcacgcgctcgcgcagcgctac
gacgagccgttcaccgacgtgcgcgacgcgctcgcggcgagcggcgtgatcgcattcggc
gggatcgctcgcggcggcgagtgcccgctcgtcgtcgatcgcgacgggcgcctgtatctc
gcgcgctacttcgaatatgagacgcggctcgcgaccgcgctcgtcgcacgagcccgttcc
ggcgatgccgcggcgggcggcgccggcgagctcgagcccgaggcgctcggcgagcggctc
gttcgctatttcggcccgcagaaggagcggggcgtcgactggcagcgcgtcgcggcgctc
gttgcgctgacgggccgtgtgacgatcgtgagcggcgggccgggcaccggcaagacgacg
acggtcgtcggcgtgatcgcgtgcctgctcgacgcgcatccggacttgcggatcgcgctc
gccgcgccgaccggcaaggcggcgcagcggatgcaggaggcgctgcacgcgcgcgccggc
agcttgccggccgagctcgcgatgcgcctgccgcagacgtcgtacacgctgcaccggctg
ctgggcggcggtccgggcgggcgtttcgcgcatcaccgcgacaacccgctgccgtacgac
ctcgtcgtcgtcgacgaagcgtcgatgatcgacgtcgcgctcgccgcgcacctgctcgat
gcgctcgcgccgaacacgcgcctcgtgctgctcggcgacaaggatcagctcgcggccgtc
gaagcgggcgcggtgttcgcggagctgagcgcgcagcccgcattcagcgcgacggcgtgt
gcgacgatcgcgcgcgcgctcggtatcgacgaggccgagttcgtggcggcgctgccggac
ggattcgtccgcggcgcggcggggatcgagaaggcgggggcgggcgcgggcgcacgcgcg
gccgtcatcgatgcgagcgcggcggcgcgcgcttcggccactgcggccgcgccggcggcg
cgagccacggctacggcggccgccaaggccgctgccgaacctgcgccgcgcgccggccgg
cgcggcggcgcacgcgaatcgaaacgcgccgccgacgacgcgcagggatcgctgttcgcg
ttcgacgacgaaagcgcgccgggcgacgacgcgtcgggcaacgacatgccgggcggcgat
acgacgggcgacgcgcagcagaatcggcgcgacacgccggacgtgcacgcgtcgtcgaac
gtgcaggacgtttacggcatggggggcgcgcagcgcatacgggcacgggccgacaacgga
tttccggccgatttgccgagggacgcgtccgccgccgagcgggccgcgtggatcgacgcg
ggcgagctcgcgtggctcgacaacgcgtccgtctcgtcactcgaagacgccgcgacgaat
gccgcgtcgggcgagtggcgcatcgcatcggcggccggagccggcgcacgtgtacgtgcc
gatgcgttgacgggcatgagcgccgatgcaggcgcggagacgggcgcttcggcttcgatg
atgatgtccgccgaagccgcatcgtcggcagcatccgccgtcgcgccgctgaccgactgc
gtcgtctggctcgagcgcaactatcgcttcggcctcgattcgccgatcggcaggctgtcg
ctcgcgatccgccgcggcgccgtgcaggacgcactcgatgcgttgtcgacagcagacgat
gcggccgcgcgcttctgcgacgacggcggcgcgacgctgtcggccgcgacgatcgaacgg
atcgcgcagggcttcgccggctacgcggccgcgctgcgcgacgcactcgcgacgcactcg
cccgatccgctgccgctcttcgacgtgctcaaccgcttccgtgtgctttgcgcgacgcgc
acgggcgcgcgcggcgcggacgaggtcaatgcgcgcgtcgcggcggaggtgcgccgcgcg
gtgcgcgtgccgctcgcgatcggcgcgcactggttcgcgggacggcccgtgatggtgacg
cgcaacgattacgcactcgggctgttcaacggcgacatcggcattgcgctgccagacgcg
cgcggcgcgctgcgcgtctggttccgaggcgcggacggccgcgcgcgcccggtgtcgccc
gccgcgctgccgccgcacgacacggcgttcgcgctgaccgtccacaagtcgcagggctcg
gagttcgacgacgcggcgctgattctgcccgcgtcgttcaaccgcgtgctgtcgcgcgag
ctcgtctacacggcgatcacgcgcgcgcgttcgcgcgtgcaggtgatcggctcgcgcgcg
gtgctcgcgctggcgattgcgacgcgcaccgcgcgcgattccgggttggccgcgcgaatc
gcagacgcgctgcgcgctcggccggaggggatgcgatga
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