Burkholderia oklahomensis C6786: BG90_476
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Entry
BG90_476 CDS
T03861
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
boc
Burkholderia oklahomensis C6786
Pathway
boc03030
DNA replication
boc03430
Mismatch repair
boc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BG90_476 (dnaE)
03430 Mismatch repair
BG90_476 (dnaE)
03440 Homologous recombination
BG90_476 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
boc03032
]
BG90_476 (dnaE)
03400 DNA repair and recombination proteins [BR:
boc03400
]
BG90_476 (dnaE)
Enzymes [BR:
boc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BG90_476 (dnaE)
DNA replication proteins [BR:
boc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BG90_476 (dnaE)
DNA repair and recombination proteins [BR:
boc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BG90_476 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AJX31557
LinkDB
All DBs
Position
I:complement(513116..516640)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDA
GIKPIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASW
LEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQRYGQPGAE
AYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQKRFTTDQF
FRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFQ
MLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
LFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGKRSRTIRYGLGAIK
GSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGALDSLHANRAQLLA
SVPLAMEAAEQAAANALQAGLFDIGGEPAHQHALVDEPAWDDKRRLQEEKSALGFYLSGH
LFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEIT
VFNEQFDVNRALFKEDELLIVQGQARNDAFTGGIRFTADSVMDLERARSRYAQAVRMTMN
GNADAAALRRVLEAHVAKPDETPAVDAPAPRGGRDGGRRAAPVIPNGLAVRIAYSNARAQ
GEMRLGDAWRVKPSDALLADLRAAFGGSVVEIVY
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgtttcgttcatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgtctcgacgatatcgtcaaggcggcggccgcagacggtcagggcgcgctcgcc
ctgaccgacctcggcaacgcgttcggtctcgtccgtttctacaaggaagcccgcgacgcg
ggcatcaagccgatcgccggctgcgacgtctggatcaccaatcacgacgatcgcgacaag
ccgtctcggctgctgctgctcgtcaaggacaagcgcggctacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaatcaataccgcggccgcgcggagctcgacgcgagctgg
ctcgaaggcgagttcgccgaagggttgctcgcgctgtcgggcgcgcaacagggcgacatc
ggcctcgcgctcgcggccggcaacgaagcggccgcgcgccgtcacgcggagcgctgggcg
aagacgttccccggcggtttctacatcgaattgcagcgctacggccagccgggcgccgaa
gcgtacatccagcaggcggtgacgatcgccgccgagctgaagctgcccgtcgttgcgacg
catccgctgcagttcatgacggccgacgacttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatcctcgcgaatccgcgtcgccagaagcgcttcacgaccgatcagttc
ttccgcacgcaggacgacatggccgcgctgttcgccgacctgccgtcggcgctcgcgaac
acggtcgagatcgcgaagcgctgcaacctgacgctcgagctcggcaagccgaagctgccg
ctcttcccgacgcccgacggcatgtcgctcgacgactacctcgtgcagctgtcgaaggag
gggctcgagaagcgtctcgtgcagctctatccggacgaggccgagcgcgaagcgcagcgc
gacacgtactgccagcgcctcgatttcgaatgcggcacgatcaagaagatgggctttccg
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtc
ggcccgggccggggctcgggcgcgggctcgctcgtcgcatactcgctcggcatcacggac
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaatccggagcgggtgtcg
atgcccgacttcgacatcgacttctgccagcacgggcgcgatcgcgtgatccagtacgtg
aaggagaagtacggcgcagacgcggtgtcgcagatcgccaccttcggcacgatggccgcg
aaggcggctgtgcgcgacatcggccgcgtgctcgatctcggctacatgttcaccgacggc
gtcgcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgccgacgcgatgaag
gaagaaccgctcctgcaggagcgctacgacaacgaggacgaagtccatcagctcctcgat
ctcgcgcagcgcgtcgagggcctcacgcgcaacgtcgggatgcatgcgggcggcgtgctg
atcgcgcccggcaagctcaccgatttctgcccgctctacacgcagggcgacgacggcggc
gtcgtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggtctgacgacgctcacgatcctcgactgggccgagcggtacatccgccgtctcgat
ccgtcgaaagagaactggtcgctcgcgcaggtgccgctcgacgatcccgcgtcgttccag
atgctcaagaaggcgaacaccgtcgccgtgttccagctggaaagccgcgggatgcagggc
atgctgaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cgtccgggcccgatggacctgatcccgagcttctgcgcgcgcaagcacgggcgcgagaag
gtcgagtatcccgacatgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgccgcgcgatgggcaagaagaagcccgaggagatggccaagcatcgcgag
ctgttccgcgagggcgcggcgaagaacggcctgacggccgagaaggccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcgtacgcg
ctgcttgcgtactacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgactgcgtc
gtcaacggcctcgccgtgctgtcgcccgacatcaatcaatcgcattaccgcttcgagccg
gtcgcggaagccgacggcaagcgctcgcgcacgatccgctacggcctgggcgcgatcaag
ggcagcggccagaacgcgatcgaagagatcctgcgcgcgcgcgaagagaaaccgttcgcc
gatctgttcgacttctgcgagcggatcgaccggcgcgtcgtgaaccgccggacgatcgag
gcgctgattcgcgcgggcgcgctcgattcgctgcacgcgaaccgcgcgcaactgctcgcg
tcggtgccgctcgcgatggaggctgccgagcaggcggccgcgaacgcgctgcaggcaggg
ctcttcgacatcggcggcgagcccgcgcatcagcacgcgctcgtcgacgagcccgcttgg
gacgacaagcgccgcctgcaggaagagaagagcgcgctcggcttctatctgtccggccac
ctgttcgacgcgtaccgcgacgaggtgcgacgcttcgtgcgccagaagctcggcgagctg
aaggaagggcgcgacaaggtggtggcgggcgtgattgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatggtgatcgcgctgctcgacgacggcaccggccaatgcgaaatcacc
gtgttcaacgagcagttcgatgtgaaccgtgcgctcttcaaggaagacgagctgctgatc
gtccaggggcaggcgcgcaacgacgcgttcacgggcgggatccgcttcaccgccgattcg
gtgatggatctcgagcgcgcacgcagccgctacgcgcaggcggtgcggatgacgatgaac
ggcaatgcggatgccgcggcgctgcgccgcgtgctcgaagcgcacgtcgcgaagcctgac
gagacgccggccgtcgatgccccggcgccgcgcggcggccgcgacggcgggcggcgcgcg
gcgcccgtgataccgaacggcctcgccgtgcggatcgcgtacagcaacgcgcgcgcgcaa
ggcgagatgcgcctgggcgacgcctggcgcgtgaagccgagcgacgcgctgctcgcggat
ctgcgcgcggcgttcggcggcagcgtcgtcgagatcgtctactga
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