Burkholderia oklahomensis C6786: BG90_897
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Entry
BG90_897 CDS
T03861
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
boc
Burkholderia oklahomensis C6786
Pathway
boc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG90_897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boc03019
]
BG90_897
Enzymes [BR:
boc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BG90_897
Messenger RNA biogenesis [BR:
boc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BG90_897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
CMS1
DegT_DnrJ_EryC1
Sacchrp_dh_NADP
Cas3-like_C_2
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AJX30908
LinkDB
All DBs
Position
I:996786..998237
Genome browser
AA seq
483 aa
AA seq
DB search
MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK
KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRD
IERLIKREISQEVIAGFEPDPNAKPEPIQRRGQRGGDGGGAGTGGGNRAPRAANQGQAPG
QPAARRDGGAQTKAAPPKAAQPKAAKPQQARGGSGRPAGSGNANGGGAHANRNRSSRSGQ
RGH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgcatctctcggcctcgccgaaccactcgtgcgggccgtcaacgagctgggc
tacacgcagcccacgccgatccaggcccaggccatccccgccgtgctgggcggcggcgat
cttctcgccggcgcgcagacgggcaccggcaagacggccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgcggaaaaccgcggcgcgcggcgcgcggtgcgcgccctc
atcctcacgccgacgcgcgagctcgccgcgcaggtcgaggaaagcgtgcgcgcatacagc
aagtatgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctgaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgcctgctcgatcac
atgcagcaaaagacgatcgacgtgtcgagcctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgaag
aaacgccagaacctcctgttctcggcaaccttctccgacgagatcaagtcgctcgcggac
agtctgctcgactcgcccgcgctgatcgaagtcgcccgccgcaacacgacggccgagacg
gtcgcgcagaagatccacccggtcgaccgcgaccgcaagcgcgagctgctcacgcatctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgcacgaagcacggcgcgaac
cggctcgccgagcagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgccctcgccgagttcaagagcagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgatcaattgccgcacgtcgtcaac
ttcgatctgccgaacgtgcccgaagactacgtgcaccggatcggccgcaccggccgcgcg
ggcgcgaacggcgaggcggtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctcatcaagcgcgagatctcgcaggaagtgattgcgggcttcgagccggat
ccgaacgcgaagccggagccgatccagcggcgcgggcagcgcggcggggatggcggcggc
gcgggcaccggcggcggcaatcgcgcgccgcgggccgcgaatcaggggcaagcgccgggc
cagcccgccgcgcgtcgcgacggcggcgcgcagacgaaggctgcgccaccgaaggccgcg
caacccaaggccgcgaagccgcagcaagcgcgcggcggcagcggacgaccggcgggcagc
ggcaacgcgaacggcggcggcgcgcatgcgaaccgcaatcgttcgtcgcgcagcggtcag
cgcggccattga
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