Candidatus Blochmannia ocreatus (nom. nud.): M9405_01985
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Entry
M9405_01985 CDS
T08515
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bocr
Candidatus Blochmannia ocreatus (nom. nud.)
Pathway
bocr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bocr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9405_01985 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bocr03019
]
M9405_01985 (rne)
03009 Ribosome biogenesis [BR:
bocr03009
]
M9405_01985 (rne)
Enzymes [BR:
bocr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M9405_01985 (rne)
Messenger RNA biogenesis [BR:
bocr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M9405_01985 (rne)
Ribosome biogenesis [BR:
bocr03009
]
Prokaryotic type
rRNA processing factors
M9405_01985 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
URJ24914
UniProt:
A0ABY4SSG1
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All DBs
Position
446635..449256
Genome browser
AA seq
873 aa
AA seq
DB search
MKRMLINATQHEELRVALVDGQKLYDLDIETIGHEQKKSNIYKGIITRIEPSLEAAFVDY
GVEKHGFLPVKEIAREYFNNISCSYNKNNIKEILYEGQELIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPKAGGISRRIEGNDRIELKEILSTLELPEGMSLIIRTAGMGKSTEAL
EWDLTSRLKHWQTIKNTAATKLAPFLIHQDNNVIVRAFRDYLRPDIGEILIDNPKILKLA
KEHMNSLGRPDFAKKIKLYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSSRSTKGIDIEDTAFNTNLEAADEIARQLRLRDVGGLVVIDFIDMTLIKHQKEIT
NNLKLAVHQDRARIQIGRISKFGLLELSRQRLSPSLGESSYYVCPRCNGMGNIRDNESLS
LSILRLIEEESLKDNTYEVHAIVPIAIASYLLNEKRKAINDIEQRQKGVRAIIVPNEYMH
TPNYEVRRIRKGETITNKPSYLLAKTFQYNDQILIQSSSTTIQNNKATSTNPDNILSLKQ
SKNSTLSRVIYIMIYNILYYNKLLYLSYYKYISKNFWFNILNSWYIFFNKLIKNFNILKK
YFFKTIKKNTKSTLKYFFYKKSAFQTLDNIHHYDQVIHAIKNNTIQHKTYNIKNFININN
QKNNTMYLAYNCKRRDKTHLMSCPLYSKNIIHKKNNKTLTNIKKYNKQYQYTEHHKNLKK
TCSTQYNIYLKYNNSKHSRTPAPGYTTEKKSIMHIQQPHKIKKLSKNINLFSKKLIDLSK
KNNIKANNNNIVMPSHFKLKPLDITSNTHQKNIIHNNNSHTNNNNRYYNKTIFHQLKNNT
HTPTIMRYFRINYKNQLHQHKDKQYFKIKKHNK
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgctactcaacatgaagaactaagagtagcattagtagat
ggacaaaaattatatgatctagatatagaaacaataggtcatgaacagaaaaaatcaaac
atttacaaagggataattactcgtattgaaccgagtttggaagcagcatttgtagattat
ggagtagaaaaacacggatttttacctgtgaaagaaattgctcgtgaatacttcaataat
atatcatgttcttataataaaaataatatcaaagaaatattatatgaaggacaagaatta
attgtgcaaatagataaagaagaaagaggtaataaaggcgcagcattaaccacttttatc
agtttagctggtagctatttagtccttatgccaaataatcctaaagctgggggcatatca
agacgtattgaaggaaatgatcgtattgaattaaaagaaattctatcgactttagaatta
ccagaaggaatgagtctaattattagaactgctggtatgggaaaatctactgaagcatta
gaatgggatttgacttcccggttaaaacattggcaaactattaaaaatactgctgctaca
aaattagcaccctttttaatacatcaagacaacaatgtaattgtacgtgcatttcgagat
tatttacggccagatataggtgaaattttaattgataatcccaaaattctgaaattagct
aaggaacatatgaactctttaggtagaccagattttgctaaaaaaataaaactatataac
ggtgatattcctttatttagtcattatcaaatagagtcacaaattgagtctgcatttcaa
cgagaagtaagattaccatctggaggatctattgtcattgatactactgaagcattaact
gcaattgatataaattcttctcgttctactaaaggaatagatattgaagatacagctttt
aatactaacttagaagctgctgacgaaatagcacgccaactacgcctaagagacgtaggg
gggttagtagtaatagattttatagatatgacattaattaaacatcaaaaagaaattaca
aataatcttaaacttgcagtacatcaagatcgcgcgcgaattcaaataggccgtatctct
aaatttggcctattagaattatcacggcaaagactcagcccatctctaggcgagtcaagt
tactatgtgtgtccacgctgcaatggaatgggtaacatacgagataatgaatcactttct
ttatctattttacgtttaattgaagaagaatcattaaaagataatacttatgaagtacac
gctattgtacctatagccatcgcttcatatttactaaatgaaaaaagaaaagctatcaat
gatattgagcaacgccaaaaaggcgtacgtgcaatcattgtgcctaatgaatacatgcac
actccaaattatgaagtaagacgtattcgaaaaggcgaaacgataactaacaaacctagt
tatttgttagctaaaacgttccaatataacgatcaaatactaattcagtcatcatcaaca
acaatacaaaataataaagcaacatctacaaatcctgataacatactatcgttaaagcaa
tcaaaaaactcaactctatcaagagtcatatatattatgatatataatatactatactac
aataaattactatatttatcgtattataaatacataagtaaaaatttttggtttaatata
ttaaacagttggtacattttttttaataaactcataaaaaacttcaatatacttaaaaag
tatttttttaaaacaatcaaaaaaaacactaaatccacacttaaatattttttttataaa
aaatcagcgtttcaaacattagacaatatacatcattatgatcaagtaatacatgcaata
aaaaataatacaatacagcataaaacatataacataaaaaattttattaacatcaataat
caaaaaaacaatactatgtatttagcatacaactgcaaaagacgtgataaaactcattta
atgtcttgtccactgtattcaaaaaatattattcataaaaaaaataataaaacccttact
aatattaaaaaatataataaacaatatcaatatactgaacatcataaaaacttaaaaaaa
acatgttcaacacaatacaacatatatttaaaatataataattctaaacactctagaaca
cctgctccggggtatacaacagaaaaaaaatccattatgcacatccaacaaccccacaaa
ataaaaaaactatccaaaaatataaatctattctcaaaaaaacttattgatttatctaaa
aaaaacaacatcaaagctaataataacaatattgttatgccttcccattttaaattaaag
ccattagacattacaagtaatacgcatcaaaaaaatatcatacataacaacaactcacat
acaaataataataaccgatattataataagacaatattccaccaattaaaaaataatact
catacaccaacaataatgcgttacttccgaataaattataaaaatcaactccatcaacat
aaagacaaacaatattttaaaattaaaaaacataataaataa
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