Candidatus Blochmannia ocreatus (nom. nud.): M9405_02720
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Entry
M9405_02720 CDS
T08515
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bocr
Candidatus Blochmannia ocreatus (nom. nud.)
Pathway
bocr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bocr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M9405_02720 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bocr03021
]
M9405_02720 (rpoB)
03400 DNA repair and recombination proteins [BR:
bocr03400
]
M9405_02720 (rpoB)
Enzymes [BR:
bocr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M9405_02720 (rpoB)
Transcription machinery [BR:
bocr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M9405_02720 (rpoB)
DNA repair and recombination proteins [BR:
bocr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M9405_02720 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
PID_4_5_C
DUF1350
Motif
Other DBs
NCBI-ProteinID:
URJ25032
UniProt:
A0ABY4SYI0
LinkDB
All DBs
Position
complement(630105..634130)
Genome browser
AA seq
1341 aa
AA seq
DB search
MVYSYTERKRIRKDFGKRPQVLDIPYLLSIQIDSFQSFIQSNTKKQCGLEIAFQSIFPIK
SYNGNAELRYLKYKLGVPTFNTKECQTRGTTFSAPLRVLLALVIYERNGSKNTIKDIKEQ
EVYMGEIPLMTDNGTFIINGIERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDLKDNLFVRIDRRRKLPATIILRALNFTTDAILQTFFCTVTYEIQHDSLYMH
LVPERLRGETASFDITANNTIYVQKGRRIAAQHILQLKQDNISKIKVPIDYIIGKVIIKD
YIDKKTGTIIATANTEISSNILNNLINAGYKTIETLFSNDLDHGNYISETLRIDTTTNKS
DALMEIYRVMRPGEPPTKESAEYLFENLFFSEERYDLSAVGRMKFNHTLQRAQTDTSVTL
KKSDIVDVIKKLIDIRNGKGNVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLA
LGDIDELMPQDLINAKPISAAIKEFFSSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAKANQYGFLETPYRQVHNGVVS
NNIQYLSAIEEGDFIIAQANTNLNEKGEFIDDLITCRYKGESGLFKTNQINYMDVSTQQI
VSVAASLIPFLEHDDANRALMGANMQRQAVPVLCSEKPLVGTGMERAVAIDSGVTVIAKR
GGTIKYVDASRIVIHVNNCETHNNESGVDIYHLTKYTRSNQNTCINQKPCVSLGEIVKQG
DVIADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQDDRFTSIHIQELTCIS
RDTKLGPEEITSDIPNIGETALSKLDESGIIYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVCGTVIDIQIFTRDGINKDKRSLIIETAKIEQIKKDL
NEELQIFEIVLFNRVYDILINSGITKDQLSITNRNNWFNFIVPNKNTQQQLSQFSKQYTN
LKNIFKKKMEAQERKITQGDELAPGILKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDQYGVPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGNKIHSMLEQQKKIDK
LRKFMQKAYDIGAGSRQNVNLNALSDEDILKLAENLKQGLPIATPVFDGATEKEIKDLLK
LAELPISGQITLFDGCTGEAFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVTGRTKMYKNIIEGNHTMDPGMP
ESFNVLLKEIRSLGINIELED
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggtgtattcctatactgaaagaaaacgtatacgtaaagattttggaaaacgccctcaa
gttctggacattccatatctactatctattcaaattgattcttttcaaagttttatccaa
agtaatacaaaaaaacaatgtggattagaaatcgcatttcaatcaattttccccataaaa
agctataatggaaacgctgaattaagatatctaaaatataaattaggcgtccccactttc
aacacgaaagaatgccaaactcgtggcaccacattttctgctccactcagagtgttatta
gcactagtaatttacgaacgcaatggatcaaagaacactataaaagatattaaagaacaa
gaagtatacatgggcgaaattcctctcatgactgataatggtacttttattattaacgga
attgaacgtgtaatagtatcccaactacacaggagtccaggagtcttctttgacagtgat
aaaggtaaaacacattcatctggaaaagtcttatataatgcacgtattattccataccgt
ggatcctggttagattttgaatttgatttaaaagataatttatttgtacgaattgataga
agaagaaaactaccagctactattatattacgtgcgttaaacttcactacagatgcaata
ttgcaaacgtttttttgcacagttacatatgaaattcaacatgattctctatatatgcat
ttagttccagaaagattacggggcgaaacagcatcttttgatatcacagctaataatact
atatatgtacaaaaaggccgtcgtatcgcagcacaacatattctgcaattaaaacaagat
aatatttcaaaaattaaagttcctatagattatattataggtaaagtcattataaaagat
tatattgacaaaaaaacaggtacaatcattgctacagctaatactgaaatatcttctaat
atattaaataacttaattaatgcaggatataaaactatagaaacattatttagtaatgat
ctagatcatggtaattatatatctgaaaccttaaggattgatactactactaataaatct
gatgccttaatggaaatttatcgagtgatgcgtcctggagaacctcctactaaagagtcc
gctgaatatctattcgaaaatttattcttttcagaagaacgctatgacctatctgctgta
ggaagaatgaaattcaatcacacattgcaacgcgcccaaacagacacatcagtcacctta
aaaaaatccgatatcgttgatgtaataaaaaaattaatcgatattagaaacggtaaagga
aatgtagatgatatagatcatctaggaaacagacgaatacgttctgtaggagaaatggct
gaaaatcaatttagaattggactagtcagagtagaacgcgcagtaaaagaacgcctagct
ctaggcgatatagatgaactaatgccacaagatttaattaatgctaaaccaatatcagct
gcaataaaagaattttttagttctagtcaattatcacaatttatggatcaaaataatcca
ttatcagagatcactcacaaaagacgcatttccgcattagggcctggtggattaaccaga
gaacgagcaggctttgaggtacgtgatgttcatcctacacattatggtagagtttgcccc
attgaaactccagaaggaccaaatatcggattaattaattcattatctgtatacgctaaa
gctaatcaatacggatttttggaaacaccttatcgtcaagtacataacggtgtagtgagt
aataatattcaatacttatcagcaattgaagaaggcgattttataattgcacaagctaat
actaatctaaatgaaaaaggggaatttattgatgatttaatcacatgtagatataaagga
gaatctggtttattcaaaacaaatcaaataaattatatggatgtatctacacaacaaata
gtatcagtagctgcttctttaattccctttttagaacatgatgatgcaaatcgggcactc
atgggcgcaaacatgcaacgtcaagcagtccctgtcttatgcagcgaaaaaccattagta
ggtactggaatggaacgagcagtagctatagattctggtgtaactgtaatagcgaaacgc
ggtggcactattaaatacgtagatgcatcacgtatcgtaattcacgtaaataactgcgag
acacataacaacgaatcaggcgtggatatatatcacttaactaaatatactagatctaat
caaaatacctgcattaatcaaaaaccatgtgtttctttgggagaaatagtaaaacaaggt
gatgtcatagcggatggcccgtctacagatttaggagagttagccttgggacaaaatatg
cgaatcgcctttatgccttggaacggatataattttgaagattctatgctagtttcagaa
cgtgttgttcaagacgacagatttacaagtatacatatacaagaattaacttgtatatca
cgtgatactaaattaggaccagaagaaattacctctgatattccaaatataggagagaca
gctttatctaaattagatgaatcaggaataatttatataggagcagaagtaacaggagga
gacatactagtcggaaaagttacccccaaaggagaaacacaactaacaccagaagaaaaa
ttattgcgcgctatattcggggaaaaagcttccgatgtcaaagattcatccttacgtgtt
cctaatggagtatgtggaactgtaattgatatacaaatatttaccagagatggcataaat
aaagataaacgttcattaattattgaaaccgcaaaaatagaacaaattaaaaaagattta
aatgaagaactacaaattttcgaaatagtattatttaatagagtttatgatatattaata
aatagtggaattacaaaagatcaattatcaataactaatagaaacaattggtttaatttc
atagttcctaacaaaaatacacaacaacaattgtctcaattttcaaaacaatatactaat
ctaaaaaacatcttcaaaaaaaagatggaagctcaagaacgtaaaattacccaaggagat
gaactagcacctggtatactcaagatagttaaagtatatctcgctgttaaacgacaaata
cagcccggagataaaatggctggacgacatggaaataaaggggttatttctaaaattaat
ccaatagaagatatgccatatgaccaatacggagtgcctgtagatatagtgcttaatcca
cttggagtcccatctcgtatgaatattgggcaaattttagagactcatctaggtatggca
gcaaaaggtattgggaataaaatccattctatgctagaacaacaaaaaaaaattgataaa
ttaagaaaatttatgcaaaaggcttatgatataggagcaggatcacgacaaaacgtaaat
cttaatgcattatcagatgaagacatactgaagctcgctgaaaatttaaaacaaggcctc
cctatagctacaccagtatttgatggcgctacagaaaaagaaattaaggatcttttaaaa
ttagctgaactacctatttctggtcaaataacactctttgatggatgcacaggagaagct
tttgaaagacaagtgactgtaggttatatgtatatgctaaaattaaatcatttagtagat
gataaaatgcatgcgcgatccacaggctcttatagtttagtaactcaacaaccattaggg
ggaaaagcacagtttggtggacaacggtttggggaaatggaagtgtgggcgctagaagcc
tatggagcatcttacacattacaggaaatgctcactgtaaaatcagatgacgttaccgga
cgcactaaaatgtataaaaacattattgaaggaaatcatactatggatcctggaatgcca
gaatcttttaacgtcctattaaaagaaattcgatcgttaggaataaacatagaattagaa
gattag
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