Bactrocera oleae (olive fruit fly): 106623662
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Entry
106623662 CDS
T07646
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bod
Bactrocera oleae (olive fruit fly)
Pathway
bod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106623662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bod03019
]
106623662
03041 Spliceosome [BR:
bod03041
]
106623662
03009 Ribosome biogenesis [BR:
bod03009
]
106623662
03016 Transfer RNA biogenesis [BR:
bod03016
]
106623662
Enzymes [BR:
bod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106623662
Messenger RNA biogenesis [BR:
bod03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106623662
Spliceosome [BR:
bod03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106623662
Complex C
U4/U6.U5 tri-SnRNP related factors
106623662
Ribosome biogenesis [BR:
bod03009
]
Eukaryotic type
Pre-60S particles
Helicases
106623662
Transfer RNA biogenesis [BR:
bod03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106623662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
DUF2026
Motif
Other DBs
NCBI-GeneID:
106623662
NCBI-ProteinID:
XP_014098735
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MADVDDLFDCFNENNDDSIAANPVVELEKIKSADSLEERRAESGEKRGSEAIKEESENDE
APQKRIKETESILDDICVDALRSRIAVHVIESPESCTHEVAVYPDQEYIPLQALTGPPAK
EYPFVLDPFQKEAIICIDNQQSVLVSAHTSAGKTVVAEYAIAKSLGCKQRVIYTTPIKAL
SNQKYREFNEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVIFDEI
HYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPT
PLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLQNAGDAAKGDQRGRKTGIRGVDSG
QSNIFKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNTTEEKKLVDEVFNNAMDV
LSEDDRQLPQVENVLPLLKRGIGIHHGGLLPILKEIIEILFGEGLLKALFATETFAMGLN
MPARTVLFTAPRKFDGKNFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPSIGRG
IVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYKQVQNKQN
ELAKLKISEEHSVASYHHIREQLDSYGKQFKRWITKPEYLVPFLQPGRLIKVLNEKDEFD
WGIIVNFKKQTNNAKNPLKAETVVVVDVLLHVTEDSAKADEPKPCKPGQKGNMEVIPVLH
SLISQISSLRVYYPNDLRPADNRRSVLKTIAEVKKRFPKGPPLLNPITDMNIKSDEFKLV
VDSIDKFEERLFAHPLHNSSDLEKIYERYTQKLKVQEDLKAVKTKLKEARSLLQMDELKH
RKRVLRRMEYCTAADVIEFKGRVACELSSADELLLTEMIFNGIFNDITTAQSVALLSCFV
CDEKSSETPKATEELSGPLRSMQDLARRIAKISTECKLNMDEESYVEKFKPFLMDVVLAW
CKGASFLSVCRMTDIFEGSIIRCMRRLEELLRQLCQAAKTIGNTDLENKFSEGVRILKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgttgacgatttatttgattgttttaatgaaaacaacgatgatagcatagcc
gccaatccagttgtagagttagaaaaaattaaatcagcggattctttagaagaaaggaga
gctgaaagtggagaaaagcgtggtagtgaagctattaaagaagagtcagaaaatgatgag
gctccacaaaaacgtataaaagaaactgaatcaatattagacgatatttgtgtggacgca
ttacgttctcgaatagctgtgcacgttattgagagtccagagtcgtgtacacatgaagta
gctgtatatcccgaccaagaatatatacctttgcaagcgcttactggaccaccagcaaaa
gaatacccctttgtattagatccctttcaaaaagaagcaattatttgcattgataatcag
caaagtgttttagtgtcagcgcacacatccgcaggcaagactgtggtagccgaatatgct
attgctaaatctctgggatgcaagcagcgtgtaatttataccacgcctattaaagcgctc
tccaaccaaaaatatcgagaattcaatgaggaatttaaggatgttggattggtaactgga
gatgtgacaataaacccatcagcttcttgtcttattatgactacagaaattttgcggaat
atgttatacagaggaagtgaaattatgcgtgaagtaggttgggtcatattcgatgaaatt
cattatatgcgagacaaagaaagaggtgtcgtatgggaggaaacgttaattttactgcct
gacaatgtacgctacgtatttctttctgctactataccaaatgctcgacagtttgccgaa
tgggtttgtcatcttcacaagcaaccatgtcatgtagtttatacggattatcgaccgact
cctctgcaacattacatatttccagctggaggcgatggcatacatctcatagttgacgag
aaaggccagtttaaggaagataattttactacagcaatggcggttttgcaaaatgcaggt
gatgcagctaaaggtgatcaaagaggacgtaaaactggtattcgaggtgttgacagtggg
cagtccaacatttttaaaatagtcaaaatgataatggaacgaaatttcgcacctgtaata
atcttttcatttagtaaaaaagattgtgaggtatatgctatgcagatggcaaagctagat
tttaataccactgaagaaaaaaaactggtagatgaggtgttcaataatgcaatggatgta
ctttctgaagacgatcgtcaattgccacaagttgaaaatgttttgcccctactaaaacgt
ggcattggtatacatcatggaggacttttaccgatcctaaaagaaattattgaaattttg
tttggcgagggcttgcttaaggcactttttgctacggaaacctttgccatgggtttgaac
atgcctgcccgtacagtactttttacagcgccgcgaaaattcgatggtaaaaattttagg
tggatttcttccggtgaatacatccaaatggcagggcgagctggccgacgtggtctcgat
gataaaggtatcgttattttaatgattgacgaaaaagtgtcaccatccattggacgaggg
attgtacaaggaaaagctgaccccataaactctgcatttcacttaacctacaatatggtg
ctgaatttgctgcgtgtagaagaaatcaatcccgaatatatgttagaacgttcattcttt
cagtttcaaaatcagtcgtccatacctgaactttacaaacaagttcaaaacaaacaaaat
gagttggcaaaattaaaaatcagcgaagaacatagcgttgcgtcctatcaccatatacgc
gaacaactcgattcttatggcaaacagtttaaacgctggattacaaaacctgaatatctg
gtgcctttcttacaaccaggtcgtttgataaaggttctgaatgaaaaggatgaattcgat
tggggtattatagtgaattttaaaaagcaaacaaataatgccaaaaatccactgaaagct
gagacagtagtggtagtcgatgttttgttacatgttactgaggattcggcaaaggccgat
gagccaaaaccatgcaagccaggccaaaagggcaatatggaagttattcccgtgctacac
tcacttatatcacagatttcgtctcttcgtgtttattatccaaatgacttgcgcccggca
gataatcgccgaagtgttctgaaaacgattgctgaagtgaaaaagcgttttccaaaaggt
ccgccacttctcaatcctattaccgatatgaatataaaaagtgatgaatttaaactggtt
gtagactccatagataagttcgaagaacgactgttcgcacatcctctacataattcttct
gatttggagaagatttacgaacgttatacacagaagttaaaggtgcaggaagatctaaag
gcagttaaaacaaaactgaaagaggcacgtagtttattacagatggatgagctgaagcat
cggaagcgtgtactacgccgaatggagtattgtacagctgctgatgtgatagagtttaaa
ggaagagttgcttgcgaattaagctcagcagatgaacttcttttaactgaaatgatattc
aacggaatatttaatgacattactacagcacagtcagtggcattgttatcatgcttcgtt
tgcgacgaaaagtcttcagaaactcccaaggcgactgaagagctttcaggtccactgcgg
tcaatgcaagacttggcacgtcgcattgcgaaaatctcgacagaatgtaaattaaatatg
gacgaggaatcgtatgtggaaaaatttaaaccttttcttatggacgtagttttggcgtgg
tgtaagggggcttcgtttttaagcgtatgcagaatgacggacatttttgaaggctcaata
attcgatgtatgcgacgtctggaagaattattaagacaattgtgtcaagcagcgaaaaca
atcggtaacacagatttagaaaacaagttctctgaaggtgtgcgaatactaaaaagagat
attgtgtttgcggcatcgttgtatttataa
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integrated database retrieval system
