Bactrocera oleae (olive fruit fly): 106627047
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Entry
106627047 CDS
T07646
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bod
Bactrocera oleae (olive fruit fly)
Pathway
bod03013
Nucleocytoplasmic transport
bod03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bod00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106627047
03015 mRNA surveillance pathway
106627047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bod03019
]
106627047
Enzymes [BR:
bod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106627047
5.6.2.5 RNA 5'-3' helicase
106627047
Messenger RNA biogenesis [BR:
bod03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106627047
mRNA cycle factors
Common to processing body (P body) and stress granule
106627047
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
Helicase_RecD
SLFN-g3_helicase
DEAD
UvrD-helicase
AAA_22
AAA_16
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_10
Motif
Other DBs
NCBI-GeneID:
106627047
NCBI-ProteinID:
XP_036221222
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEENDLIGADTQASEFDFRDFTLPSQSQTQASQLEGIGGNTTQ
SKLNVLTNNLAELQFEEEDDDTSILAVKELPNHACKYCGIHDPGTVVMCNNCKKWFCNGR
GSTSGSHIVNHLVRAKHREVTLHSEGPLGETVLECYSCGVRNVFVLGFIPAKADSVVVLL
CRQPCAAQNSLKDMNWDQDQWKPLITDRSFLPWLVKVPTEQEQLRARQISAAQINKLEEL
WKENIDATFQDLEKPGIDTEPSQVLLRYEDGYQYEKVFGPLVRLEAEYDKKLKESQTQEG
IEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWNEIGHVIKVPDNYG
EDVGLELKSSAGAPVKCTSNFAVDFIWKCTSFDRMTRALKVFAMDRSSVSNYIYARLLGH
GRHDGSDELLFRGPIPKLFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT
IVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRLCAKSREAIDSPVSFLALHNQ
IRNMETNIELKKLQQLKDETGELSSADEKRYRTLKRAAEHQLLEAADVICCTCVSAGDVR
LARIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSL
FERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLKIDFPWPQPDRP
MFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGIITPYEGQRAYLVQ
YMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTR
SKYGTIIVGNPKVLSKQPLWNHLLNFYKDRKVLVEGSLNNLKESLIQFQKPKKIVNTLNM
GAHFMTTMMADAKEAMIPGSIYDRSGQYGYSSGPINASNYGTSGLGLGLGYGGSNNLGYG
SGAAAAQMQAAAAQNLNNFMSGNFGAIGARNSGPSATVNQAAANAHQWNHHHDSISYISP
ERAQAAMNNMPVPVGMFMNMSNIPPRFYNQHQQAIQAAAKQGRRTGAGLGATGIAINNSG
SGSGSGNGVSKLFNNFNSSLAGVANKNQNVKSRNSMQAPNTTTPTTTTANDIASVLIGAG
STSSQNNALPLTQQNMSQQMSQPGGFTLSQQPELSQDFGQISQIDSILSQDVNFTASNLT
TDRMKFGLNSQSQFSQPY
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagacgcatatgggcctagttcgcagactttgacatttttggatacagaggag
aatgacttgattggcgctgatacgcaggcatcagaattcgattttcgcgacttcacgttg
ccttctcaatcccaaacacaagcctctcaattggagggtattggtgggaatacaacacag
agcaaattgaatgtactaacaaacaatttggcggagttgcaatttgaagaggaagatgac
gatacgtctatattagcggtgaaagaacttcctaatcatgcctgcaaatattgtggcatt
cacgaccctggcacagtagttatgtgtaataactgtaaaaaatggttttgcaatggaagg
ggtagcacatccggatcacatatagttaatcatttggtgcgcgccaagcatcgagaggtg
acacttcattctgaaggtcctcttggcgaaactgtactcgagtgttattcatgtggtgtt
cgtaatgtttttgttttaggatttatccctgctaaagcggattcagtagttgtactattg
tgtcgtcaaccatgtgctgcacaaaattctttgaaagatatgaattgggatcaagatcaa
tggaaacctttgataacggatcgctcttttttaccatggctggtaaaggtacccaccgag
caagaacaattacgcgctcgtcaaatatctgcagctcaaataaataaattggaagaattg
tggaaagagaatattgatgcaacgtttcaagatcttgagaaacctggaattgatacggaa
ccatctcaagtgctccttcgatacgaagatggttaccaatatgaaaaggttttcggacct
ttggtacgattagaagcggaatatgataagaagttgaaggaatcccaaacacaagaaggc
atagaagtgcgttgggatgttggcttgaacaagaaaaccatcgcctattttacattagct
aaaactgattctgatatgaaactaatgcatggtgatgaattaagattgcgttacgttgga
gagctgcataagccatggaacgaaattggtcacgttataaaagtacctgacaattatggc
gaagatgtcgggttggagctaaagtcctcagcaggtgcaccagttaaatgtacctctaac
tttgccgttgattttatttggaaatgcacatcatttgatcgaatgacccgggcacttaaa
gtatttgctatggatcgcagttcagtgtctaattacatatacgctcggcttcttggacat
ggcagacatgatggcagtgatgaactcctatttcgaggtcccataccaaaactttttagt
gctccgaacttacccgatttgaatcgttcccaagtttatgctgttaaacacgcattgcaa
cgaccattaagtctaattcaaggtccaccgggtacaggaaaaaccgtcacctcggccaca
atagtatatcaattagtgaaacaacatggaggcaccgtgctcgtatgtgcaccgagtaac
acagcagtagaccaacttacggaaaaaattcatcgcactaacttaaaagtagttcgcctc
tgcgctaagtctcgagaagcaatcgatagtcctgtcagcttcctagctttacataatcaa
attcgtaatatggaaaccaatatagaattaaagaagttgcaacaactcaaagacgagaca
ggcgagttgagttctgctgatgaaaagcgataccgtactttgaaacgagccgctgagcat
caattactcgaagctgctgatgttatttgttgcacctgcgtaagcgccggtgacgtgcgt
ctagcacgtataaaattcacttctatcctcatagatgaatccatgcagtccactgagcca
gaatgcatggtaccagttgttttgggagcgaaacagttgatacttgtcggagatcactgt
cagttgggtccagttgtgatgtgcaagaaagcagccagagctggtctatcgcagagcttg
ttcgaacgtctagtagttttgggtatccgcccctttcgactggaagtccagtatcgaatg
catccagaattgtcacaattcccctcaaacttcttttatgaaggctcgctgcagaacggc
gtttgtgctgaagatcgcaaactaaagattgactttccttggccacagcctgataggccg
atgtttttccttgttacccaaggacaagaggaaattgcgggctcgggaacatcctatctg
aatcgtacggaagcagcaaatgtagaaaaaataactacacgatttctcaaggctggcgtc
aagccagaacagattggtatcattacgccgtacgagggccaacgagcttacttggttcaa
tacatgcaatatcagggaagtttgcactccagactatatcaggaaattgagattgctagc
gtcgatgctttccagggcagagaaaaagacataataataatgtcatgtgtgcgatctaat
gagcgtcaaggtatcggtttcctcaatgatccacggcgtttgaatgtcgcattaactcgc
tcaaaatatggcactatcattgtgggcaatcctaaagttttgtccaagcaaccgctttgg
aatcatttacttaatttctacaaagatcgcaaagtcttggttgagggctcgttgaacaac
ctaaaggagtcgctaatacaatttcaaaagcccaaaaagattgtcaatacgctaaatatg
ggcgctcactttatgaccacaatgatggctgatgctaaggaagccatgattcccggctcc
atttacgatcgatccgggcaatatggttattcatctggcccgattaacgcgtccaactat
ggtactagtggtcttggcttgggattggggtatggcggtagcaacaacttaggttacggt
agcggcgcagcagctgcacaaatgcaagcagcagcagctcagaatttgaacaattttatg
agcggcaattttggcgctatcggtgcccgaaacagcggcccaagtgcaacggtaaatcaa
gcagctgctaatgcgcaccaatggaaccatcaccacgattcgatcagctacatttcgcca
gaacgcgcccaagcagcaatgaataacatgccagtcccggttggtatgttcatgaacatg
agcaatattccaccgcgcttctacaaccaacaccaacaggcgatacaagccgcggcgaaa
caaggtcgccgaactggtgccggcctgggagctaccggtattgctataaacaacagtggc
agtggcagcggcagtggcaatggtgtcagcaagctatttaataatttcaattcttcgctt
gctggtgttgctaataaaaatcaaaatgttaaaagtcgtaacagcatgcaagctcctaat
actacaacgccaacaacaactaccgccaacgatattgctagtgttctgattggcgctggt
tccacatcatcgcagaacaatgccttgcccctcacccaacaaaatatgtcacaacagatg
agtcaaccagggggctttacattgtcacaacagcccgagctgtcacaggattttggtcaa
atttcgcaaatagatagcatactttctcaagatgtaaattttaccgcgagcaatctcacc
actgataggatgaaattcggcctgaacagtcagagtcaattctcgcagccttattga
DBGET
integrated database retrieval system
