Brassica oleracea (wild cabbage): 106292472 Help Entry 106292472         CDS       T04124                                  Name (RefSeq) ATP-dependent RNA helicase DHX36   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism boe  Brassica oleracea (wild cabbage) Pathway boe03018   RNA degradation Brite KEGG Orthology (KO) [BR:boe00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     106292472  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:boe03019]     106292472    03012 Translation factors [BR:boe03012]     106292472 Enzymes [BR:boe01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      106292472 Messenger RNA biogenesis [BR:boe03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      106292472 Translation factors [BR:boe03012]  Eukaryotic type   Initiation factors    Initiation associated factors     106292472 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Helicase_C DEAD R3H OB_NTP_bind HA2_C Ank_5 HA2_N nSTAND3 Ank_2 AAA_19 AAA_22 ATPase AAA_7 PhoH Sigma54_activat Sigma54_activ_2 AAA_11 Stb3 Motif Other DBs NCBI-GeneID:  106292472 NCBI-ProteinID:  XP_013583520 UniProt:  A0A0D3C848 LinkDB All DBs Position C5:2469235..2475534 Genome browser AA seq 1368 aa AA seqDB search MGKKMNRDQNTELSDSSRIWASKFLKEFRASGRDSHTFDNSLTNDVRGIIHQMCRKMGIR SKSSGKGDQRRLTIFKRAPRPSSVSGSEKKKLKRVSFPPEAEPILQDLFTRYPPCDGDTR ATSLGVYTGHFGRQRKWKDDFFGKPQMNKDDVRNKAASLSSRLANDKDFREIFGARTKLP IASFREAITSAVESNQVVLIAGETGCGKTTQVPQYLLDHMWYSKRESCKIICTQPRRISA ISVSERISWERGESIGNNVGYKVRLNSKGGRQSSVVFCTNGILLRVLVGKGGGSCVPDIT HIIVDEIHERDCYSDFMLAIIRDFLPSNPHLRLILMSATLDAERFSEYFGGCPVVQVPGF TYPVRTFYLEDVLSVLKSEKNHHLISDDSSIPDVKRDIKDEDEVALDEAIEMAWTNDEFE ALLDLVSSEGSHEVYNYRQSSTWLTPLMVFAGKGRVNNVCKLLALGADCKLKSKEGMTAL ELAEKEKQFEAAQIIREHTDNVQSNSQQEQVLLDKYMATINPEEVDVGLIVNLMRKLCRD SEAGAVLVFLPGWEEISKTKERLLANPYFADSAKYNIICLHSRVPVEEQKRVFKRPPQGC RKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLESSWVSKANAKQREGRAG RCQPGICYHLYSKLRAASLPEYRIPEVRRMPVDELCLQVKMLDPSCNVNDFLQKLMDPPV DRSIANALTTLKDIGALTPQEELTELGQKFGQLPVHPRICKMLYFAILVSCLDPALILAC AADTKDPFTMPLEPGERRKAVAAKRELASLYGGHSDHLAIVAAFHYWKDAKRNGHSQEFC SQYFVSPNAMKMLDNMRDKLQGELERHGLIPRNDSNCNLNAHDPGILRAVVAVGLYPMVG KMCPPSMNNNRRSLVETITGAKVRVLSLSNMSSREEDEALIVFDEITRGDWDVHIRESTT LRTIPLLLFAGEIAVAPTESCDADKSDDEKDNEEETVGDVMDIDKVGGRPGDKIMHAPEN SVKVVVDRWLPFEMTALEIAQIYILRERLVASILFKVKHPQENLPPHLGASMYAIACILS FDGLSKPSVPTVDMEPVASAVDATGLGDDPNTAMGESLFSNLADGNELLDLVTAPTEADS AVKEPEKKRSRSKKHKSANMDSVNMGADLSTASDEAASAVEEPVKKRRRSKKRRSAKNLD LASEQPELKLAKESDLGNMEESLPSNPVNGNELPDTNTVPAEDASAGEEPEKKRSRSSKK RKSAKNLDLGNMEVKETFDLANNGNDQTELKPASKEKEIIPANHTNGNEQPDPQMESASA ASEPEKKQSRSKRRKLANSSSSGNNTEENVPSTNNGNELLSSGLTEAA NT seq 4107 nt NT seq  +upstreamnt  +downstreamnt atggggaagaagatgaatagagatcaaaatacagaactctcagattcctctcggatttgg gcctccaagttcctcaaggagtttcgcgcctccgggagagattctcacacatttgataac agtctcacgaacgacgtacgtggcattatccatcagatgtgccggaagatgggtatccga tcgaaaagttccgggaaaggggatcaaaggcgtcttacgattttcaaacgtgcacctcgc ccctcttcagtttccgggagtgagaagaagaagctcaagcgtgtctcgtttccaccggag gcggaacctattcttcaggatttgtttactcgctatccgccttgtgacggagatactaga gcgacgtcactgggcgtatatactggacatttcgggagacaacgcaagtggaaagatgac ttctttggcaaacctcagatgaacaaagatgatgttcgaaacaaggcggcgtctctgagt tctagattggcaaacgacaaagattttcgggagatctttggagcacgaaccaagcttccc atcgcatcctttagagaggccatcacatctgcagtggaatctaatcaggttgttcttatt gctggtgaaactggttgtggcaaaactactcaggtgcctcaatatcttctagaccatatg tggtatagtaagcgagaatcttgcaaaatcatttgcacccaaccacgtcgtatctcagct atttcagtttctgaacgaatttcttgggaaagaggtgaatctatagggaacaacgtcggc tacaaggtgcggctgaacagcaaaggtggaagacagtcatcagttgttttctgtacgaat ggcattctgttgagggtgcttgtaggcaaaggcggtggtagctgtgttcctgatataact cacattattgtggatgaaattcatgaaagggattgctactctgatttcatgttggccatt ataagggacttccttccttcaaatcctcatctccgactgattctaatgagtgctactctt gatgccgagaggttttctgaatatttcggaggttgtccggttgtccaagtgcctggattc acttatccagtgagaaccttttatctggaagatgtgctctctgtcctgaaatcagagaag aatcatcatctaatttctgacgactcgagcataccagatgtcaagcgtgatattaaagat gaagatgaagttgctttagacgaagcaattgaaatggcgtggacaaatgacgagtttgaa gctctcttagatctggtttcctccgaaggaagtcatgaggtttacaattacaggcaatca tcaacctggctaacaccacttatggtctttgctggaaagggcagggttaacaatgtctgt aagctcctcgcacttggcgctgactgtaagttgaagtccaaggaaggtatgacagcacta gaattggccgaaaaagagaagcaatttgaagctgctcaaataatcagggaacataccgat aacgtccagtccaattctcagcaagaacaagtcttacttgataagtatatggcgacaatc aatccagaagaagtagacgtgggtcttatagtgaatttaatgaggaaattatgccgcgac tcagaagctggtgccgttcttgtttttctacctgggtgggaggaaataagtaaaacgaaa gagagattgcttgctaatccttattttgcagatagtgctaaatacaacatcatatgtcta cactcaagggttccggtagaggaacagaagagagtttttaaacgtccccctcaaggttgt cgcaaaatcgtgcttgcaacaaatattgctgaatcagcagtcactatcgatgatgtggtt tatgtgatagatagtgggcggatgaaggaaaagagctatgatccttataatgacgtgtca acgctagaatcttcttgggtttcaaaagcgaatgcaaaacagcgggagggtcgagcaggc cggtgccaacctggaatttgttatcatctctattctaaacttcgggcagcctctttacct gaatatagaatccctgaagttaggaggatgccagtagatgaactctgcttgcaggttaag atgctggatccgagttgcaatgtaaatgatttcctccagaaattgatggacccgcctgtt gatcgaagcattgcaaatgccttaaccacccttaaagacattggagcattgacaccacaa gaagagctgacagaacttggacagaaatttggccagcttccagttcatcctcggatttgc aagatgctttattttgccatattagtgagttgtctggacccagcacttattctggcatgt gcagccgacaccaaggatccatttaccatgcccttggagccgggagaaagaagaaaagct gttgccgcaaaacgtgaacttgcgtcgctttatggaggccacagtgaccaccttgcaatt gttgcggcttttcattattggaaagatgcaaaaagaaatggtcattctcaggagttctgt tctcagtacttcgtctctccaaatgccatgaagatgctggataatatgcgtgacaagctt cagggggaacttgaaagacatgggctcattcctagaaatgactcgaactgtaatctgaat gctcacgatccaggcattctccgtgctgttgtagcagtgggattgtaccctatggtggga aaaatgtgcccaccttccatgaataataatagaaggtcactagtagagaccattacggga gccaaagttcgtgtgctatcgctttcaaacatgtcctctagggaggaggatgaagcttta attgtttttgatgagatcactcgaggagattgggacgtgcacataagagaaagcactact cttcgcactataccgttgttactgtttgcgggagagatagctgtggctcctacagagagc tgtgatgctgataagagtgatgacgagaaagacaacgaagaagaaactgtaggagatgtg atggacatagacaaagtaggtggtaggcctggagataaaataatgcatgcaccggaaaat tcagtcaaggtggtagtggatcggtggctgcctttcgagatgacagctcttgaaattgct caaatttacatcttgagagagcgactagtggcatccattttgttcaaggtaaaacatcca caagaaaatttgccgcctcatctcggagcttctatgtacgcaatagcttgtattctctca tttgatggcctctcaaaaccttcagttccaactgttgatatggagcctgttgcttcagcg gtagatgcaacaggtctcggagatgacccaaacactgcaatgggagagagcttgttttcc aatctcgctgatgggaatgagctacttgacctagtcactgctccgacagaagctgattca gcagttaaagaaccagagaagaagagatcaaggtccaaaaagcacaaatcagccaacatg gattcggtgaacatgggagctgatttaagcactgcttcggatgaagctgcttcagcagtt gaggaaccagtgaagaagcgacggaggtccaaaaagcggagatcagccaaaaatttggat ttggctagtgagcaaccagagcttaagctggccaaggaatcggatttgggtaacatggaa gagagcttgccttccaatcctgttaatggaaatgagctgcctgacacaaacactgttccg gctgaagatgcttcagcaggtgaagaaccagagaagaagcgatcaagaagttccaaaaag cgaaaatcagccaagaacttggatttggggaacatggaagtgaaagagacttttgatcta gctaataatgggaatgatcaaacagaacttaagccagccagcaaggagaaagagatcatc cctgcgaatcataccaatgggaatgagcaacctgaccctcaaatggaatctgcttcagcg gctagtgaaccggaaaagaagcaatcaagatccaaaaggcgcaaattagcgaacagctca agttcgggtaataacacggaagagaatgtgccttccactaataatgggaatgaacttcta agcagtggtcttaccgaagctgcatga

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