Brassica oleracea (wild cabbage): 106292521
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Entry
106292521 CDS
T04124
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106292521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106292521
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106292521
mRNA degradation factors
5'-3' decay
Decapping complex
106292521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
DUF445
Motif
Other DBs
NCBI-GeneID:
106292521
NCBI-ProteinID:
XP_013583577
UniProt:
A0A0D3CKM7
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Position
C5:complement(41237211..41243339)
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AA seq
1338 aa
AA seq
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MASSPGNPNPNNPPPFDLGTLFKPSSSPFPTPPASYPPPAGPFLQQPYPPPPQQQEAAPS
SSSSLLQQQRSLPFPSPPLNLPQSPSPRASANHNPGTHILALLNNNNNNGATNQDPPPQH
QAPVASPHEIRSFPSSPVRVPSCKLPRGRRLSGEHAVYDVDVRLHGEIQPQLEVTPITKY
GSDPQLVVGRQIAVNKIYICYGLKGGNIRVLNINTALRALFRGHSQRVTDMAFFAHDVHL
LASVSLDGKVFVWKISEGSEGDDDPQITGKIVLALQILGEEDTKHPRVCWHSHKQEILVV
SIGKHVLLIDTTKVGRGEVFSSESPIQCHLDKLVDGVKIVGKHDGEVTDLSMCQWMITRL
VSSSVDGTVKIWQDFKAQPVAVLRPHDGHPVNSATFVTSPERSDHVILITGGPLNREMKI
WVPTGEEGWLLPAESESWNCTQKLDLKSSTEPRAEMAFFNQVIALSEAGLLLLANAKRNA
IYAVHLDYGSSPADTRMDYLSEFTVTMPILSFIGTNDPPEEAVVKVYCVQTQAIQQYTLD
LCLCLPPPIEESVGLEKSDSSVSREANLVEGISKPSGMKLTDLPSADSVPKPSILVNRSK
GANTSTYLAGSASVETTAPVLVSSNGEPKASGLLSETSAAGSAYATSPQLPLSPRLSSTL
CGHQTPVDVIEPMLPHHELGGQGPSVYSVDRQADPVKERNLEESSRSKDKDVTPADDVSG
MRTPQAFFKHPTHLVTPSEFLMRVSSAEASITTEDKRDRDANIQDVNIDSRDTEVEVKEV
GESSSTQNGEINYSDETEHRTSVNTEKIFYSQTTNLSTEMARDCYPGTELEESKAYEQSV
QAGDNLESRDVSGKLPESVSSIGLPQSAATNKGKKQKSKSSQGPGLSSTSSNVANLADTY
NEQTQSSSQPILALQETMNQMMVSQKEMMVSQKEMQRQLSNAVNGPVTKEGKRLEVAIGR
MIERSSKSNADALWARLQEEIVKNEKAMRDNSQQIVNAVTNFMSKELNALFEKTIKKEIA
TNIPAIARALSPAIEKTVSSSVTESFQRGLGDKSVNQLDKSVNSKLEATITKQIQTQFQT
SGRQALQEALRSGLEASLIPSFERSCKTMFEQVDAAFQKGMAEHTNAAQQRFDAGHSQLA
HTLKETITSASSVAQALSRELAESQRNRLALAAAGANSSGSNTLVSQRSSGPLGALLEKV
EADPITELSRLILERKYEESFTSALYRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLS
LLQQLAFDISKDSSRKLAWMTDVVAAINPSDPMVAVHGRPIFEQVYQILHHHRNTPGSDV
SATRLIMHVINSMLMACK
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttcacctggaaaccctaaccctaacaatcctccgccgttcgatctcggtact
ctcttcaaaccttcgtcgagtcctttccccacgccgccggcgtcgtatcctccccccgcg
ggtccgtttcttcagcagccctacccccctccgccgcagcaacaggaggccgcgccttcc
tcttcgagtagccttctccaacaacagagatcactccctttcccctcgccgcctctgaat
ctcccccagtcgccgtcgccgcgtgctagtgctaatcacaatcccggtacacacatcctg
gctctcctcaacaacaacaacaacaacggcgcgaccaatcaagatccgccgccgcagcat
caggctcccgtggcgagtccgcacgagatccgctcgtttccttcgagtcctgttcgcgtg
ccgagctgtaagcttcccagagggaggcggttgagcggggaacacgctgtgtacgatgtc
gacgtgaggttacacggcgagattcagcctcagcttgaggttactccgattaccaaatac
gggtcggatcctcagctcgttgtgggtcgccaaatcgcagtgaacaagatctacatatgc
tatggattgaaaggaggaaacattcgtgttctcaatattaacaccgctttaagagcttta
ttccgaggccattctcagcgagtgacagacatggccttctttgctcatgatgttcatctc
ctggctagtgttagcttagatggaaaagttttcgtgtggaaaatatctgaagggtctgag
ggagatgatgacccccagataactggaaagattgtccttgctcttcagatacttggtgag
gaagacaccaaacatccacgtgtttgttggcactcccacaaacaggaaattttggtggtt
tcaattggtaaacacgtcctcctaattgatactaccaaagttggcagaggtgaagtattc
tcgtctgagtctccgattcagtgccaccttgataaattggttgacggtgtaaagattgtt
ggcaagcacgatggagaggttacagatttatctatgtgccagtggatgatcacacgcctc
gtttcttcttctgttgatggcacggttaagatttggcaagatttcaaggcccaaccagtt
gcagttctgagacctcatgatggccatccagtcaattcggcaacatttgtgacatcccct
gagagatctgatcacgtcattctcatcactgggggtcctctaaatcgagagatgaagatt
tgggtcccgactggagaagaaggatggctcctgccagctgaatctgagtcatggaattgt
actcagaaacttgatttgaaaagttcaactgagccacgagcggagatggcgtttttcaac
caagttatagccttgtctgaagcaggcctcctcttgcttgcaaatgcgaaaaggaacgcc
atatatgctgtgcatttggactatggctcatctccagctgatacaaggatggactacttg
tctgagtttacagtcactatgccgatattaagttttatcgggactaatgatcctccagaa
gaagccgttgttaaggtttattgtgttcagacgcaagcaatccagcagtatacattagac
ttatgcttgtgtttgcctcctcctatagaggagagtgtgggtttggagaagtcagattct
agtgtttcgcgggaggctaatttggttgaaggcatatcaaaaccatctggaatgaagctt
acagatttaccttcagctgattcagtgcctaaaccatctattttagtgaatagatcgaaa
ggtgctaatacttcgacttatttggcgggttctgcatctgtggagacgacagcaccagta
cttgtttcatccaacggcgagcctaaagcttctgggctgctatctgagaccagtgctgca
gggtcggcgtatgctacttcaccccagcttcctctaagtcccagactatcaagtacactt
tgtggccatcagactccagtggatgttattgagccaatgctaccacatcatgaactcggt
ggtcaaggaccttctgtatattctgttgataggcaagcagatcctgttaaagaaagaaat
ttggaggaaagctcaagaagcaaggacaaggatgttacgcctgctgatgatgtgtctggg
atgcgaaccccacaagctttcttcaagcaccccacgcatcttgtaactccttcagagttt
ttgatgcgcgtttcgtctgctgaagcttccattaccactgaagacaaaagggatagagat
gcaaatatccaggacgtcaatattgattcaagagacacagaagttgaggtaaaagaagta
ggggaatcaagttcgacgcagaatggtgaaatcaattacagtgatgaaactgagcatcgc
acttcagtaaatacagaaaaaatcttttactcacagactacgaacctgagcactgagatg
gcaagagactgttatcctggtacagagttagaggaatctaaggcttatgaacagtctgta
caagctggggataatcttgaatcgagagatgtgtctggaaagcttcctgagtcggtttca
tcaattgggcttccacagtcagccgctacaaacaaagggaagaaacagaagtccaaaagc
tcacagggtcccggattgtcatctacatcctcaaatgttgctaatttggctgatacctac
aatgagcaaactcagagttcaagccaacctatcttagctttgcaagaaacaatgaatcag
atgatggtttcacagaaggagatgatggtttcacagaaggagatgcagagacaactgtcc
aatgctgtcaatggccctgtcactaaagaaggtaaaagactagaagtggctatagggaga
atgattgagagatccagcaagtcaaatgctgatgctctgtgggcccgcttacaagaggag
atcgttaagaatgaaaaggcaatgcgtgacaattcacagcaaattgtgaatgcagtgaca
aacttcatgagcaaagagttaaatgcattgtttgagaaaacgataaagaaggagattgct
acaaatattccagccatagctcgtgcgttgtcaccagctattgaaaaaactgtatcttct
tcagtcacagagtccttccagagaggacttggtgacaaatcagtcaatcagcttgataaa
tctgttaattcaaagcttgaggcaaccataactaagcaaattcaaacccaatttcagaca
tctggcaggcaagccctccaggaagctcttaggtcgggtctggaggcctcgctcatacct
tcctttgagaggtcatgcaagaccatgtttgagcaagtagacgcagccttccagaaaggg
atggccgagcacacaaacgcagcccaacaacggtttgacgctggacactcccaacttgct
catactttaaaggaaaccattacttctgcgtcgtcagttgctcaagcattgagccgtgaa
ttagcggagagccaaaggaatcgcttagctctcgccgccgctggagcaaattctagtgga
tcaaacaccttggtttctcaacgaagtagtggacctttgggtgctcttcttgaaaaggtt
gaagcagacccaataacagaactatcaaggttgatattggaacgcaaatacgaagaatca
tttacttcagctttatatagaagcgatgtctccatagtatcatggctctgctcacaggtg
gatctgcgtggactactggcgatgaacccgcttcctctgagccaaggcgttcttctgtca
ctgctgcaacagctagcctttgacatcagcaaggactcatcccgtaagcttgcatggatg
accgatgtggttgcagcaattaacccatcagacccgatggttgctgtccatggtcgccca
atctttgagcaagtgtatcagattctgcaccaccaccgcaacacaccaggcagcgacgtc
tctgccacaagacttataatgcacgtgataaactccatgcttatggcctgcaaatga
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