Brassica oleracea (wild cabbage): 106292648
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Entry
106292648 CDS
T04124
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106292648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106292648
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106292648
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
106292648
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Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
S1
Motif
Other DBs
NCBI-GeneID:
106292648
NCBI-ProteinID:
XP_013583732
UniProt:
A0A0D3C7B0
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All DBs
Position
C5:931920..933673
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AA seq
323 aa
AA seq
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MMMRKIQLPFTQTQKVRYERAIERLQSLSSTVNSDASVIVTDTIPVNHEDAFLKGHGTSE
VDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFTQDGV
LMLSSMNMPDGSQRRRTSVDELNMRNIFVEHDVVCAEVRSIQHDGSLQLHARSQKYGKLE
KGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFIWVGEHVEVRDPVMMIDGQKDDEM
ISSSSSTKEQSHTPLETRQNICRIGNAIRVLSNLGFTVTVQVITETVNLSNSKNVDIHEM
LCSEFHVLVAENEAERRREKRKK
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgagaaagatacagctaccgtttacccagacgcagaaggtcaggtacgagaga
gcaatcgagcggctacaatcactctcatcgacggtaaactccgacgcatctgttatcgtc
acggacaccattcccgtcaaccacgaagacgccttcctcaagggacacggaacttccgag
gtcgacggcgagctgctcgcgacggtctgtggagttgttgagcgcgtggataagctcgtc
tatgtacgcaccttacgcgccaggtacaagcctgaggttggtgatatcgtagtaggccgt
gtcattgaggttgctcaaaaacgttggagagtagagctaaactttactcaggatggtgta
ctaatgctttcttccatgaacatgcccgatggtagtcagaggcgaagaacgtctgtagat
gaactcaacatgcggaacatctttgtagaacatgatgtcgtttgtgccgaagtacgcagc
attcagcatgatgggagcttgcagttacacgcacgaagtcagaagtatggaaagcttgag
aagggacagcttctcaaggttgatccttacttggtcaagagaagcaaacatcacttccat
tacatagaaagccttggcatcgatttgatcatcggctgcaatggcttcatatgggtgggg
gaacacgtcgaggtcagagatcctgtgatgatgatagatggtcaaaaggatgatgagatg
atctcttcctcctcctccaccaaagagcagagccacactccactcgagactcgacaaaac
atatgcagaatcgggaatgccatacgcgtcttatccaacctaggcttcaccgtgactgta
caagtgatcacggagactgttaacctcagcaactcaaagaatgtcgacatacacgagatg
ctctgttcagagtttcacgttttggtagcagagaatgaagctgaaagaagacgtgaaaag
aggaaaaagtga
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