KEGG   Brassica oleracea (wild cabbage): 106292648
Entry
106292648         CDS       T04124                                 
Name
(RefSeq) exosome complex component RRP4
  KO
K03679  exosome complex component RRP4
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106292648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106292648
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     106292648
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     106292648
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N RRP40_S1 EXOSC1 S1
Other DBs
NCBI-GeneID: 106292648
NCBI-ProteinID: XP_013583732
UniProt: A0A0D3C7B0
LinkDB
Position
C5:931920..933673
AA seq 323 aa
MMMRKIQLPFTQTQKVRYERAIERLQSLSSTVNSDASVIVTDTIPVNHEDAFLKGHGTSE
VDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFTQDGV
LMLSSMNMPDGSQRRRTSVDELNMRNIFVEHDVVCAEVRSIQHDGSLQLHARSQKYGKLE
KGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFIWVGEHVEVRDPVMMIDGQKDDEM
ISSSSSTKEQSHTPLETRQNICRIGNAIRVLSNLGFTVTVQVITETVNLSNSKNVDIHEM
LCSEFHVLVAENEAERRREKRKK
NT seq 972 nt   +upstreamnt  +downstreamnt
atgatgatgagaaagatacagctaccgtttacccagacgcagaaggtcaggtacgagaga
gcaatcgagcggctacaatcactctcatcgacggtaaactccgacgcatctgttatcgtc
acggacaccattcccgtcaaccacgaagacgccttcctcaagggacacggaacttccgag
gtcgacggcgagctgctcgcgacggtctgtggagttgttgagcgcgtggataagctcgtc
tatgtacgcaccttacgcgccaggtacaagcctgaggttggtgatatcgtagtaggccgt
gtcattgaggttgctcaaaaacgttggagagtagagctaaactttactcaggatggtgta
ctaatgctttcttccatgaacatgcccgatggtagtcagaggcgaagaacgtctgtagat
gaactcaacatgcggaacatctttgtagaacatgatgtcgtttgtgccgaagtacgcagc
attcagcatgatgggagcttgcagttacacgcacgaagtcagaagtatggaaagcttgag
aagggacagcttctcaaggttgatccttacttggtcaagagaagcaaacatcacttccat
tacatagaaagccttggcatcgatttgatcatcggctgcaatggcttcatatgggtgggg
gaacacgtcgaggtcagagatcctgtgatgatgatagatggtcaaaaggatgatgagatg
atctcttcctcctcctccaccaaagagcagagccacactccactcgagactcgacaaaac
atatgcagaatcgggaatgccatacgcgtcttatccaacctaggcttcaccgtgactgta
caagtgatcacggagactgttaacctcagcaactcaaagaatgtcgacatacacgagatg
ctctgttcagagtttcacgttttggtagcagagaatgaagctgaaagaagacgtgaaaag
aggaaaaagtga

DBGET integrated database retrieval system