KEGG   Brassica oleracea (wild cabbage): 106292934
Entry
106292934         CDS       T04124                                 
Name
(RefSeq) chromatin structure-remodeling complex protein BSH
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03082  ATP-dependent chromatin remodeling
boe03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    106292934
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    106292934
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:boe01009]
    106292934
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boe03021]
    106292934
   03036 Chromosome and associated proteins [BR:boe03036]
    106292934
Protein phosphatases and associated proteins [BR:boe01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     106292934
Transcription machinery [BR:boe03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     106292934
    SWI/SNF complex
     106292934
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    106292934
   PBAF complex
    106292934
   SWI/SNF complex
    106292934
SSDB
Motif
Pfam: SNF5
Other DBs
NCBI-GeneID: 106292934
NCBI-ProteinID: XP_013584057
UniProt: A0A0D3CJ92
LinkDB
Position
C5:37400978..37403354
AA seq 240 aa
MKVSGSTNWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDADNEIAIFARRTV
KDLKLPPAFFTQISQSIQSQLADFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL
NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAVQSVSSARESRLSKKSRRG
SDYGSASKASGLSMDLVKLFSFKSSVVRKRKDLDVYEPMVDLLTNEEVDALEAREERHAR
NT seq 723 nt   +upstreamnt  +downstreamnt
atgaaggtttcagggtctactaattggaaaggtcccgtcaagttcaggatgcctactgct
gagaacttggtacctattcgtttggacattcaattcgaaggtcagcgttacaaagatgcc
ttcacttggaacccttcagacgcggataatgagatcgctatcttcgctagaaggactgtt
aaagacttgaaacttccccctgcgttcttcactcagatttctcaatctattcagtctcag
ctcgcagactttcgagcatatgaaggacaagatatgtacactggtgaaaaaatcatacca
atcaagcttgatctccgagttaatcacaccctcatcaaggatcagttcttgtgggacctg
aacaatttcgagagtgatcctgaggaatttgcaaggaccttgtgcaaggatttaggtgtt
gaagatcctgaagttggacctgctgttgcatttgcaatcagagaacaactttacgagatt
gcagttcaaagtgtgagttcagctagggagagtagattaagcaagaaaagccgcagagga
tctgattatggttcagcgagcaaggcgagtggcttgtcaatggacctagtgaagttattc
agctttaagtccagtgtagttcggaaaaggaaagacttggatgtttatgaaccaatggtg
gatctgctaacaaatgaggaagttgatgctcttgaagccagagaagagaggcatgcacgg
tga

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