KEGG   Brassica oleracea (wild cabbage): 106293135
Entry
106293135         CDS       T04124                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106293135
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106293135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106293135
   03041 Spliceosome [BR:boe03041]
    106293135
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106293135
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106293135
Spliceosome [BR:boe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106293135
 Complex C
  U2 snRNP components
    106293135
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256
Other DBs
NCBI-GeneID: 106293135
NCBI-ProteinID: XP_013584259
LinkDB
Position
C5:complement(927535..928810)
AA seq 93 aa
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcttacttcaaggatttggtgggacaagaagtgacggttgagctgaag
aacgatttagcaatcagagggacacttcactcggttgatcagtacctcaacatcaagctc
gagaacactcgtgttgttgatcaggacaagtaccctcacatgttgtcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtgcagttgcctcctgatggagtcgatgttgac
ttacttcacgatgctgctagaagagaggccagaggtggatga

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