Brassica oleracea (wild cabbage): 106293135
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Entry
106293135 CDS
T04124
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106293135
09123 Folding, sorting and degradation
03018 RNA degradation
106293135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106293135
03041 Spliceosome [BR:
boe03041
]
106293135
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106293135
mRNA degradation factors
5'-3' decay
Lsm complex
106293135
Spliceosome [BR:
boe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106293135
Complex C
U2 snRNP components
106293135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF1256
Motif
Other DBs
NCBI-GeneID:
106293135
NCBI-ProteinID:
XP_013584259
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All DBs
Position
C5:complement(927535..928810)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttctcttacttcaaggatttggtgggacaagaagtgacggttgagctgaag
aacgatttagcaatcagagggacacttcactcggttgatcagtacctcaacatcaagctc
gagaacactcgtgttgttgatcaggacaagtaccctcacatgttgtcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtgcagttgcctcctgatggagtcgatgttgac
ttacttcacgatgctgctagaagagaggccagaggtggatga
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