Brassica oleracea (wild cabbage): 106293308
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Entry
106293308 CDS
T04124
Name
(RefSeq) polyadenylate-binding protein 6
KO
K13126
polyadenylate-binding protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106293308
09123 Folding, sorting and degradation
03018 RNA degradation
106293308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106293308
03041 Spliceosome [BR:
boe03041
]
106293308
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106293308
mRNA cycle factors
Stress granule specific factors
106293308
Spliceosome [BR:
boe03041
]
Complex C
Other components
Complex C specific factors
106293308
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_RdRP1_2
RRM_10
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
106293308
NCBI-ProteinID:
XP_013584425
UniProt:
A0A0D3CJM4
LinkDB
All DBs
Position
C5:38668847..38671369
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AA seq
570 aa
AA seq
DB search
MAAIVKTEMQPVGNSQSSSLASLYVGDLSPDVTEADLTAKFSLTVPVVSAHLCRDSVTGK
SLRYAYVNFDSAITASNAMACLNHTDLKGKTMRIMWSQKDVAYRRRSGLGNLFVKNLDSS
ITSSCLERMFSPFGVILSCKVAEENGQSKGFGFVQFATEQSAVAARLASHGSMVDGKKLF
VAKFINRDERAAMSGNQEFTNVYVKNLLESVTEDFLHTMFSQCGTVSSVVVMRDGMGRSR
GFGFVNFCHPENAKKAVETLNGQPHGSKKLFAGRALRKAERMEMLKQKHKDNFVAKFNVG
WFNLYVKNLTESMGETKLREIFGSYGKIVSAKVMRDENGKSKGFGFVAFSTLDESKHAKR
ELHGFIVDGQSLVVRVAERKEDRFKRMQKYHPVQSRHYMQAAPVPSPAQPVPPSMEYKQY
YGVQPRNYTQALPVPSPAQPVPPPSMSSSPYGYLQPFHIGAYYYPMATQLPQMSGHQNLT
TYVPAGQAHLKEKRSVQLVYKRPGYTTFVKSGAKQKLVFKGQGDKNLEAGTCSTKAKTSA
EKRKEVSSHLMAMLTPNRNAAQNLATLEVA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgatcgtgaaaacggaaatgcaacccgtaggaaacagccagtcctcgagcctc
gcttcgctttacgtcggcgatcttagccccgacgtgacggaggctgatctcaccgccaaa
ttctccttgactgtccccgtcgtctccgctcatctctgccgcgactccgtcaccggaaaa
tcactgcgttacgcttacgtcaacttcgactcagccatcaccgcgtcgaacgctatggcg
tgcttgaaccacaccgatttgaaggggaagacgatgcggataatgtggtctcagaaagat
gttgcgtaccgtcgtcgtagtggattggggaatctcttcgttaagaatcttgacagctcc
atcactagcagttgcttagagcggatgtttagtcccttcggagtcatactttcttgcaaa
gtcgctgaggagaatggccaaagtaaaggcttcggttttgttcagtttgctacggagcaa
tctgctgttgctgctcgtcttgcctcccacggatctatggttgatggcaagaaactgttt
gtggctaagttcattaacagggatgaaagagctgctatgtctgggaatcaagagttcaca
aacgtttatgtgaagaatctgctcgagagtgttacagaggattttctccataccatgttt
tctcaatgtgggacggtctctagtgttgtggttatgagggatggtatgggaagatccaga
ggtttcggatttgtcaacttctgccatccagagaatgcaaagaaagctgtggaaactctc
aatggacaaccacatggttcgaagaagttgtttgctggaagggctttgagaaaagctgaa
aggatggagatgctgaaacagaaacacaaagacaactttgttgccaagttcaatgttggt
tggtttaatctgtacgtgaagaacttgaccgaatcaatgggcgaaacaaagctgcgagag
atatttggaagctatgggaagatagtttcagcaaaagtgatgcgtgatgaaaatggcaaa
agtaaaggattcggctttgtggctttctctacccttgacgagtccaaacatgctaaaaga
gagctccacggatttatagtggatggacagtcacttgttgttcgagttgctgaacgtaag
gaggatcgcttcaagaggatgcagaaatatcatccagtacaatctcgccattacatgcaa
gctgctcctgtcccttcaccagctcagccggtcccgccatctatggagtacaagcaatat
tatggagtgcagccacgcaattacacgcaagctcttcctgtgccttcaccagctcagcca
gtcccaccaccgtctatgagcagcagcccatatggttacttgcagccattccatattgga
gcatactattaccctatggccactcagttaccacagatgtcgggtcaccaaaacttgacc
acctacgttcccgctggccaagctcatctgaaggagaaaagatcagttcaactagtctac
aaacgcccgggttacaccacctttgtcaagagtggtgctaaacagaaactggtctttaag
gggcaaggtgacaaaaatttagaggcaggcacttgctccaccaaagcgaagacatctgct
gaaaaacgtaaagaagtatcatcgcatttgatggcaatgttgacaccaaataggaatgct
gcacagaatttagcaacacttgaagttgcttag
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