Brassica oleracea (wild cabbage): 106293461
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Entry
106293461 CDS
T04124
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106293461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106293461
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106293461
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
106293461
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106293461
NCBI-ProteinID:
XP_013584589
UniProt:
A0A0D3CLY6
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Position
C5:complement(43727092..43728941)
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AA seq
287 aa
AA seq
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MVACSVGEQHFLKGGIAQELRTDGRKRLTYRHTYVETGVIPQANGSARVRIGGTDVIASV
KAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGA
GINLSSLLIKEGRVCWDLYIDGLVISSDGNLLDALSAAIKAALTNTALPKVQVSAEVADD
EQPEIDISDEEYQQFDTSSVPIIVTLTKVGEHYIVDATEEEESQMSLAVSISVNRAGHIC
GLTKRGGSGLDQSVILDMISVAKHVSETLMNKLDSKISAAEACEDES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgtgttctgttggggagcaacacttccttaaaggtgggattgctcaggaactt
cgaactgatggtcggaaaagattgacttaccgtcatacctacgtcgaaacaggtgttatt
ccgcaggctaatggttcagcgagagttaggataggtggaactgatgtgattgccagtgta
aaggctgagattgggaggccaagttcgctccaacctgataaaggaaaggttgctgttttc
attgattgcagtccaacagcagaacctaccttcggggggagagggggtgaggaattgtct
tctgagcttgctttggctcttcaaagatgtcttttaggtggcaaaagcggagcaggcgct
gggataaatttatcttcgcttttgatcaaagaaggaagagtctgctgggacctttatata
gatgggcttgtcattagctctgatggcaatctattggacgcactgagtgctgccattaag
gctgctttaaccaacacggctctaccaaaagtccaagtttcagctgaagtggcggatgat
gagcaaccagagattgacatcagcgacgaagagtatcaacagtttgacacttccagtgtc
ccaatcatagtcacgttaactaaagtgggagagcattacatagttgatgcaacagaggaa
gaggagtctcagatgagcttagctgtgtctatatccgtgaaccgggcgggccatatatgt
gggttaaccaaaagaggcgggtctggtttagaccagagcgtcatccttgacatgatctct
gtggccaagcatgtgtcagagactctgatgaacaagcttgattctaagatttcagctgca
gaggcctgtgaagacgagtcttga
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