Brassica oleracea (wild cabbage): 106293841
Help
Entry
106293841 CDS
T04124
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106293841
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106293841
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106293841
NCBI-ProteinID:
XP_013584932
UniProt:
A0A0D3C9S8
LinkDB
All DBs
Position
C5
Genome browser
AA seq
385 aa
AA seq
DB search
MASLLLTVSLLFAAFSYPLVEAAYYSNSYYTTPKPLLNPIDSCWRRNPNWASNRRALADC
AVGFGKAAIGGKYGSVYVVTNPSDNPENPRPGTLRHAVIQSKPLWITFARDMVIVLQNEL
IMNSYKTIDGRGAKVEIAYGACITVQHVNHIIIHGISIHDCKPGKSGRVRSSPTHIGSRK
GSDGDAIAIFDSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDN
NVEDRIMRVTIAFNHFGPGLIERMPRVRLGYAHIANNRYEKWQMYAIGGSANPTIFSEGN
YFVASDDPSKKQVTKRIESGYDSKRWKWRTSKDVFKNGAYFVQSGYGTVTPLYGRAEWFP
VSHGSLVPSLTSSAGPLRCYSGRTC
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcttttgttaacagtttcacttctctttgcagctttctcttatcctcttgta
gaggctgcttattatagtaatagttactacaccaccccaaaaccattactaaacccaatc
gattcttgctggcgtagaaaccctaactgggcatctaaccgccgcgctctagccgattgc
gcggttgggttcggtaaagccgcaatagggggcaaatacgggtcagtctacgtggttaca
aacccatcggacaaccctgaaaaccctagacctggaaccctaaggcacgccgtgattcaa
tctaaaccgctatggatcacattcgcacgtgacatggtcatagtgttgcaaaacgagctc
atcatgaacagctacaagactatcgacggaagaggagccaaggtggaaatcgcatacggg
gcatgcataacggtccaacatgtgaaccatatcattatacatgggataagtatccatgat
tgtaaaccgggtaagtcgggtcgggtgcgcagcagtccgacccatattggaagtaggaaa
ggatcggacggtgacgcaatcgccatatttgattcttcacatatttggatcgatcattgt
ttcttttctcggtgtcaagatggtttgatcgatgtgcttcatgcttcgacggccgtcact
atttctaataattacttcacacagcacgataaagtgatgttgctcggccataatgacaat
aatgtggaagatcggattatgcgagttacaattgcattcaaccattttggaccgggtctc
attgagagaatgcctagagtgaggctagggtatgcgcatatagctaacaatagatacgag
aagtggcaaatgtatgcaatcggaggaagtgctaatccaactatcttcagcgaaggcaac
tacttcgttgcttctgatgaccctagcaaaaaacaggtgacaaagagaatagaaagcgga
tatgattcgaaaaggtggaaatggagaacatcaaaagacgttttcaagaacggagcttac
ttcgtgcagtctggatacggaaccgtcacgccgttgtacggaagagcagagtggtttccg
gtgtcccacggctctctcgtcccttctctcacttcctccgccggccctctccgttgctac
tccggcaggacttgctga
DBGET
integrated database retrieval system
