Brassica oleracea (wild cabbage): 106294181
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Entry
106294181 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: exopolygalacturonase clone GBGA483-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Module
boe_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106294181
Enzymes [BR:
boe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106294181
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
106294181
NCBI-ProteinID:
XP_013585225
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Position
C5:43696985..43698608
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AA seq
412 aa
AA seq
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MVGLRRAKTVLLVLVVVISNTIATGAPLDPGPKGTAGSLDVKAAGAKGDGTTDDTAAFTA
VWKTACEAPGPSTITVPKGDYLXEFLGPCKGPVTFEMSGNMKAPATVAAVKPNSGWVDFT
NLADFTLNGNGAIFDGQGSLAWKANDCAKTGKCNSLPINIRFTGLTNSKIIGITSTNSKL
FHMNVLNCKNVTLENIGIDAPPESLNTDGIHIGRSIGVNLIGAKVKTGDDCVSIGDGTEN
LIVENVECGPGHGIAVGSLGRYPNEQPVRGVTVRKCLIKNTSNGVRIKTWPGSPPGIASN
IIFEDITMDNVSTPVLIDQEYCPYADCKAGVPSKVKLSDVTFKNIKGTSARKIAVKLICS
VGTPCTNVALADINLVHNGPEGPAVGACANMKPVLTGQMIPPACTEIAKPGP
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtttgcgcagagcaaagacggtacttcttgtattagtagtggttatttccaac
acaatagcaaccggggcaccccttgatccaggacccaaaggaaccgcaggatcacttgac
gttaaagcagcaggagccaaaggagacggaacaaccgatgacactgcggcatttacggct
gtgtggaaaacagcatgtgaagcaccaggaccgagcacgattacagtgccaaagggtgac
tatttgngtgagttcttaggtccatgcaagggtcccgtcactttcgaaatgagtggcaat
atgaaagctccagctacggtcgctgccgttaagcctaactctggatgggttgattttact
aatcttgctgatttcactttgaacggaaacggagccattttcgacggtcaaggctcactc
gcctggaaggccaatgactgcgccaaaactggaaagtgcaactctctccccattaacata
cgattcacgggtctaacaaactcgaaaattatcggcataacatcaacgaacagcaaactt
ttccacatgaacgttctcaactgcaagaacgtaactcttgagaatattggtattgatgca
cctccggagagtctcaacaccgatggtatccacatcggaaggtccattggcgtgaactta
ataggggcaaaggttaaaaccggagatgactgcgtttccataggagatggtactgaaaat
ctcattgttgagaatgtggaatgtggaccaggacacggcattgctgtaggaagtcttgga
aggtaccctaatgagcaaccagtcagaggagtcaccgtgaggaaatgcctcatcaagaac
accagtaatggtgttcgcatcaagacatggcctggatctccccccggtatcgcctccaac
attatttttgaggatatcacaatggacaatgttagcactcctgttctcatcgaccaagag
tactgtccgtatgccgactgcaaagctggggtaccatctaaagtgaaattatcggacgtg
actttcaagaacattaaaggcacatcagcgagaaagattgcggtgaaattaatctgcagc
gtaggcacaccttgcactaatgttgctcttgctgacatcaacttggtccacaacggtcca
gaaggaccagctgtgggggcatgtgctaacatgaagcctgttctcaccggacagatgatt
ccacctgcttgcactgagatcgctaaaccgggtccttga
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