Brassica oleracea (wild cabbage): 106294410
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Entry
106294410 CDS
T04124
Name
(RefSeq) protein TSS
KO
K03255
protein TIF31
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
boe03012
]
106294410
Translation factors [BR:
boe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106294410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_10
eIF3_p135
TPR_NPHP3
CLU_N
TPR_2
TPR_9
TPR_MalT
TPR_8
CLU
TPR_1
Motif
Other DBs
NCBI-GeneID:
106294410
NCBI-ProteinID:
XP_013585416
LinkDB
All DBs
Position
C5:299082..308724
Genome browser
AA seq
1777 aa
AA seq
DB search
MAPKNNRGKTKGDKKKKEEKVLPVMVDVIVNLPDETEAILKGISTDRIIDVRRLLSVNFD
TSHVTNYSLSHEVRGSQLKDTVDVSALKPCVLTLTEEDYNEGTAMAHVRRLLDVVACTTC
FGPSPEKSDSVKNAQAKGGGKNPKQTETSPPPSPAPKDAVVDEAGETSHSFPKLGSFYEF
FSLAHITPPLQYVRLVAKRETEDIAADDHLLSIDVKLCNGKLVHVEGCRKGFYSVGKQRI
ICHNLVDLLRQISRAFDNAYSDLLKAFSERNKFGNLPYGFRANTWLIPPSAAQSPAAFPP
LPVEDERWGGDGGGQGRDGSYDLVPWANEFAFIASMPCKTAEERQLRDRKVFLLHNLFVD
VATFRAIKAVQKVMADPVLAEDSQVLYSETVGDLSVTVTRDTSNASSQVDTKIDGIQATG
LDKTKLMERNLLKGLTADENTAAHDVATLGTISLKYCGYISVVKIEKENEKLSPPSQIVD
LLEQPEGGANALNINSLRFLLHKSSPEQNKKTHQQQDDELTSSREFVSKMLGESLVKLEE
EEIDRDNIMRWELGACWIQHLQDQKNTEKDKKQTNEKSKNELKVEGLGKPLKSLNSNKKK
TDASSPKAQQTAVSSQVDTASSEADNAAITATLQSDAEKNAQENVLVLKNLLSEAAFTRL
QESDTGLHDKSLQELVDLAQKYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMR
SLGYVVKLSDKLSHVQSLCVHEMIVRALKHILQAVISAVATDTDKIAAKVAAALNMMLGI
PKTEAENSWNVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRKFAILRGLCHKVGIELIPRD
FDMESPEPFQKTDVVNLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAK
LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATTYQQKALDINERELGLDHPDTMKSYGD
LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL
HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRT
QDAAAWLEYFESKAFEQQEAARNGTPKPDASIASKGHLSVSDLLDYINPSHNAKGKQSVA
AKRKSYMKLKEKSNQNVVSEQLAETPRENQKEMSEEETEATGSEDGQSSDANQETILASA
EEPPSPPVIDEATVDNSNSITSAEVSTETQHPDGSEDGWQPVHRPRSAGSYGRRLKQRRA
SIGKVYTYQKKNVEADNDNPVLQNATQPNSKYYVLKKRTASSANYGDHHSPGMTTQGTKF
GRKVVKTLAYRVKSMQPSSENPKTSAETSEEDGLKTDAFPAVPSGLSSNVQNEAYPKNSV
VSLGKSPSYKEVALAPPGSIAKYQVWAPQAEASDKQEENNSEEGTSVELTRDEQMITVSE
EEVKNEISADAESSKPQGKEEIKVELQSSEVEFKGNNLNENEESGGGIQVEEPVLEANEG
VTDMIHSTTEQEVKDQLAADSDDLKEKLGISATDSSDAPRELLLPNKKLSASAVPFNPSS
PPSIIRPTPIGMNIGPSWPVNMTLHHGPPPFPSPPATPNLMQPMSFVYPPPYTQSIPTST
YPVTSGPFHPNQFPWPHMSEFVPRTVWPACHPVEFSPPHMIAPEPIASTVLEPTVILPTD
IDTSGVEEGKQDVAATAGETMDSVNHVNAVASSEMENGNKKFEEGEKTFSILLRGRRNRK
QTLRMPISLLNRPYDSQPFKIAYSRVIRGSEAPKSAA
NT seq
5334 nt
NT seq
+upstream
nt +downstream
nt
atggctcccaagaacaaccgtggaaagacaaaaggagacaagaagaagaaggaagagaaa
gttcttccggttatggtggatgtcattgtgaaccttccggacgagacggaggctattttg
aagggcatatcaacggacaggatcatagatgttcgtcggcttttatccgttaacttcgac
accagccatgtcaccaactattctctctcccatgaggtaagaggatcgcagttaaaagac
acagtggatgtttcggcgcttaagccgtgtgttctcacgttaacagaagaggattacaat
gagggaacagcgatggcgcacgttagacggctgcttgacgtcgtcgcctgtactacttgc
ttcggtccgtcgccggagaaatccgattcggtgaaaaatgcgcaggctaagggaggtgga
aagaatcccaaacagaccgaaacgtcgcctccgccgtctcctgcgccgaaggatgcggtg
gttgatgaagccggagagactagtcactctttccctaagctcggaagcttctacgaattt
ttctctctcgctcacatcactcctcctcttcaatatgtacggctcgtggcgaagcgggaa
accgaagatatcgcggcggatgatcatcttctctccatcgatgtgaagctttgtaacggg
aagctcgttcatgtcgaaggctgcagaaaaggattctacagcgtcgggaaacaaagaatc
atatgtcacaatcttgttgatttgcttagacaaattagtagagccttcgataatgcttac
agtgatcttctgaaagcattttcggagcgcaacaagtttgggaatcttccttatgggttt
agagcaaacacatggctcatcccgccttctgcagcgcagtcaccagcagcgtttccgcct
ctccctgtcgaggatgagagatggggaggggatggtggtggtcaaggaagagacggcagc
tacgatttggttccgtgggccaacgaatttgcctttatcgcatcgatgccttgcaaaaca
gcagaggagaggcaacttagagacagaaaagtgtttctccttcacaacctcttcgttgat
gtcgccactttcagagccatcaaggctgttcagaaagtaatggctgacccagttctggct
gaagactctcaagtgctgtattccgagacagttggagacttgagtgttacggttacgagg
gatacttccaatgcaagtagccaagtggatacaaaaatcgacggaattcaagccactggt
ttggataaaacgaagctgatggaacggaaccttctcaagggacttacagctgatgagaac
actgctgctcatgatgttgctactttaggaactataagccttaagtattgtggttacatt
tctgttgtcaaaatagagaaggagaatgagaagttaagcccaccttctcaaattgttgac
ctccttgaacagcctgaaggtggtgctaatgctctaaacatcaacagtttgagattcctt
ctccataaatcctctcctgagcagaacaagaaaacacatcagcaacaggatgatgagctt
acatcttcccgagaatttgtaagtaaaatgctgggggaaagtcttgttaagcttgaggaa
gaagagatagacagggataatatcatgaggtgggaacttggagcctgttggatacagcat
ttacaagatcaaaagaatacggaaaaggacaaaaaacaaaccaacgaaaagtctaaaaat
gaactcaaggttgaagggcttgggaagccgcttaagtctctcaacagcaacaagaaaaaa
acagacgcaagcagccctaaggcgcagcagactgcagtatcatctcaggttgatacggct
tcttcagaggctgataatgctgcaataactgcaactttgcaatctgacgccgagaagaat
gctcaagaaaatgtgcttgtcctgaagaatttgttgtctgaagcagccttcactcgccta
caagagtcagatactggacttcacgacaagtctttgcaagaacttgtcgacttggcacaa
aagtattatactgaagtcgctattccgaagctggttgcagattttggttcgttggaactc
tccccagtcgatggccggactctaactgattttatgcacacaagaggtcttcggatgcgc
tctttaggatatgtcgttaagctctcagataagttgtcacatgtacagtctctgtgtgtt
catgagatgatagttagagcccttaagcatatccttcaggcggtgatttctgctgttgct
actgacactgacaaaatagctgcaaaagtagctgctgctctgaacatgatgcttgggatt
ccaaaaactgaagcggaaaactcttggaatgtgcatcctcttatcttccggtggttggag
aaattcttgaagaaacgatatgactacgatctcaatgccttcagttacaaggatctacga
aagtttgccattctccgtggattatgccataaggttggtattgagctgattccaagggat
tttgacatggagtccccagaaccgttccaaaaaacagatgtggtcaatctggtcccagtg
cataagcaagcagcatgttcgtctgctgatggaagacaacttctggagtcatctaaaaca
gcattagacaaaggaaaacttgaagatgcagttacatatggaacaaaggctcttgctaag
cttgtagcagtttgtggtccctatcacagaatgacagccggagcttacagtttacttgct
gtcgttctgtatcacactggtgattttaaccaggctactacatatcagcaaaaggcttta
gatatcaatgagagggaacttggacttgatcatccggatacaatgaagagttatggtgat
cttgctgtcttctattataggcttcagcatacagagctggctctcaagtatgttaagcgt
gcgttgtatctcttacatctaacatgtggtccatctcatccgaacactgctgctacatac
atcaatgtagccatgatggaggaaggtctaggaaatgtacatgttgccttgaggtatctt
cacaaagctctcaagtgtaatcagaggttgcttggtcctgaccatatccagactgctgct
agctaccatgccatagccattgcgctctcgttgatggaagcataccatttaagtgttcag
catgagcaaacaaccttaagaatcctccgagcaaagctgggcccagatgatttgcgtact
caggatgctgctgcttggctagaatactttgagtccaaggcttttgaacaacaggaagct
gcacgaaatggtactcctaagcctgacgcgtctatagccagcaaaggccacctaagtgta
tccgatctactcgactatatcaacccaagccataacgcaaaagggaaacagagtgtggca
gcgaagaggaagagctatatgaagctaaaggaaaaatccaatcagaacgttgtttctgaa
cagttagcagaaaccccaagggaaaatcaaaaggaaatgtctgaagaggagacagaagca
actggatcggaagatggtcaatcgagcgatgcgaatcaggagacaattcttgcatcagct
gaagaaccaccttctcctccagtcattgatgaggctactgtggataatagtaattcaatt
acatctgctgaagtttcaactgagacacaacaccctgatggtagtgaagatggatggcag
ccggtgcatagaccgagatctgctggatcatatggtcgccggctgaagcaacgacgagca
tcaattggaaaggtatatacctatcagaagaaaaatgttgaagctgataacgataaccct
gttctccagaatgctactcagccgaactccaaatactacgttctgaagaagcgtacagcg
tcctctgcaaactatggagatcatcattctcccggtatgacaactcaaggcaccaaattt
ggcaggaaggtagttaaaaccttggcatatcgggttaaatcaatgcagccgtcttctgaa
aaccccaaaacttcagctgaaacatcagaagaagatgggttgaagacagatgcttttcct
gctgtgccatctggtctgtctagtaatgtgcaaaatgaggcatacccgaaaaactctgtt
gtaagtcttggaaaatctccatcctacaaggaagtagcattggcgccacctggttccatt
gccaagtatcaagtctgggctccacaagccgaagcttcagataagcaagaggagaacaat
tctgaagagggcacatcggttgagcttacaagggatgagcagatgattacagtgtcagag
gaagaggtaaaaaatgaaatttctgcggacgcagagtctagcaaacctcaaggcaaagaa
gagatcaaagtagagttacaatcgtctgaagtggaattcaaagggaacaatctgaatgaa
aatgaagaatctggtgggggcattcaggtggaagaaccagtacttgaagctaacgaaggt
gtaaccgatatgattcattccaccacagagcaagaagtgaaagatcagctggccgctgat
tccgatgatctgaaggaaaaactgggaatctctgctacagactccagcgacgccccgcga
gagttactgttacctaacaagaagttatcagcttcagctgttccattcaacccatcatca
cctccaagtatcatacgtcctactccaataggcatgaatattggaccgtcgtggccagtg
aacatgactcttcatcacggacctcctcctttcccatcacctcctgcaactccaaatttg
atgcagcctatgtcctttgtataccctcctccttacactcaatcaatccccacaagtact
tatcctgtaaccagtggtcctttccatcccaatcagttcccatggcctcatatgtcggag
tttgtaccaagaacggtttggcccgcatgccatcccgttgagttttcccctccacacatg
atcgctcccgagccaatagcttcgactgtcttagagccaaccgtcattctaccaactgat
attgacacttcaggtgtggaagaaggcaagcaagatgtggcggcaactgcgggtgaaact
atggattctgttaatcatgtgaatgcagtggctagcagtgaaatggagaatggaaacaag
aaatttgaggaaggcgagaagacgtttagcattttgttaagaggaaggagaaacaggaaa
caaacactgagaatgccgatcagtttgcttaacaggccttatgattctcaaccgttcaag
attgcttatagcagagtcatcagaggcagcgaggctcccaagtccgcggcttga
DBGET
integrated database retrieval system