Brassica oleracea (wild cabbage): 106294541
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Entry
106294541 CDS
T04124
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106294541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
boe03036
]
106294541
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
106294541
SWR1 complex
106294541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
106294541
NCBI-ProteinID:
XP_013585576
UniProt:
A0A0D3CKS5
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All DBs
Position
C5:complement(41502928..41511655)
Genome browser
AA seq
2019 aa
AA seq
DB search
MASRGGKSIPDSAMSSKGAKSRPDSDSKPKRHKTLEAPKEPRRPKTHWDHVIEEMIWLSK
DFESERKWKLAQAKKVALRASKGMVDQASREERKLKEEEQRLRKVALNISKDVKKFWIKV
EKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKHGHNKSPKPILAI
ESKSDEERAEETPSELNASAGLESETLDVDEDYDLNSEDASEDDEDTIEEDEKHFTKQER
QEELESLQNEVDLPVEELLRRYTASRVSGETSPERDENEANLASVGEDHIEADKNNLTAS
EETEGSPSVRRSNDSFDHLAVSETHTHDHKPGPKTASVKSGKEDQTYDFNDEQEDVDFVA
ATGEEKDDETTLSVEEELAKADSVDPEDEIALLQKESEMSIEELLARYKEDFGGKDLSED
DSSDIRQQADSDDENVESAECKPALQPCSEKDEGTSNEIKEDDGKDNSDKIADAAAAARS
AQPTGFTYSTTKVRTKLPFLLKHSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMT
IALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWM
KLNSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL
TGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQDKINREVIDRLHNVL
RPFLLRRLKRDVEKQLPQKHEHVIFCRLSKRQRNLYEDFIASTETQATLNSGSFFGMISI
IMQLRKVCNHPDLFEGRPIVSSFDMPGIDVQLSSRICSLLLKSPFSRVDLEDLGFLFTHH
DFSMTSWEGDEIKTISTPSDLIKHRVDLKDNPEEVPLSLVNRKNLQGTNIFEEIRKAVFE
ERVKESKDRAAAIAWWNSLRCRRKPTYSTSLRTLLTIKGPLDDIHHLKANRPSYMYSSML
ADIVLSPIERFQKVIELVEAFTFAIPAARAPSPACWCSKSDSPVFLSPSYKEKVTDLLSP
LLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDILE
AFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY
DSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQNGEY
NTEFFKKLDPMELFSGHKTLTRKDEEEKSKNCEAELPLSNADVEAALKHAEDEADYMALK
RVEEEEAVENQEFTEEPIERPEDDEIVNEDDIKSDEPADQGVAAAGSAKEEVSLVPIDNR
DERDDIITLSQEEDNDVPDDVKQMAAAAAAAGQAISSFENQLRPIDRYAIRFLEVWDPII
VEAAIENEAGFEEKEWELDHIEKYKEEMEAEIDDGEEPLVYEKWDADFATEAYRQQVEVL
AQHQLMEDLENEAREREAAEEAERRLALNESAHVLKPKKKKKVKKAKYKSLKKGSLGSES
KQAKPVVKVEASSDEDNEECGYVSSSDSDMVSPRLQKRMKGKKRELVFDSDEEKNSKKKA
KKHKKPLSHSDIKCKTPHDELVPSKPSDSMAVDNELKPANRGKTLGKKFIISMPIKRVLM
IKPEKLKKGNLWSRDCVPSPDSWLPQEDAVLCAMVHEYGSNWSLVSETLYGMAAGGAYRG
RHRHPAYCCERYRELMQRHVLSASDSVVNEKNLNAGSGKALLKVTEENMRALLNVAAEQP
DTEMLLQKHFTCLLSSIWRTSTRSTNNQKLSLNSPIFNRQVMGSANHTQELARKPFQGMK
ITSLSSKLVEFALQDSSTSQPLDTASRPRLQEPINKVGLDLTLEFPHGNDDSSTHFPPII
KLTIDGSDSFNYVNDPPGEDKLKVSRIAAEDRYRNAANACIEDSFGWASNTFPAYDPKSR
SGVKAQSLGKHKLSASDTPKSSKSKQRKLSAAEQSEVSWVRRNDPNLKFDFTPADREEVE
EDKEVSEEIEMIGCSHWYDPLLTSGLDDCSLASEPSGIE
NT seq
6060 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctagaggtggaaagtcgatacccgattcagcaatgtcgtccaaaggtgccaaa
tctagacccgatagcgactccaaacctaagcgacacaagacgctggaagctcctaaagag
ccgcgacgacctaagactcactgggaccatgttatagaggagatgatttggctctcaaag
gactttgagtctgagaggaaatggaagctagctcaggcaaagaaagttgctctgagggcc
agcaaaggcatggtagatcaagcttcgagggaagaaaggaagcttaaggaagaagaacag
agactgaggaaagtagcccttaatatctctaaagacgttaaaaagttttggatcaaagtt
gagaagctggtgctctacaagcatcagctagtacgcaatgagaaaaagaagaaggctatg
gacaagcaacttgagtttctgttaggccagactgagaggtactcaactatgttggcagaa
aatttagtggagccttataaacatggccacaacaaatctcctaaacctattctggctatc
gaatcaaaaagtgatgaagaaagggcagaagagacaccttcggagttgaatgcttctgca
ggtcttgaatcagaaactcttgatgtcgatgaggattatgatctcaattccgaggatgcg
tcagaagatgatgaagatactattgaggaggatgaaaagcacttcaccaaacaggaaagg
caagaagagttggaatctttgcaaaatgaagtggatctaccagttgaggagctactcaga
cgttatactgctagtagagttagcggagaaaccagcccagaaagagatgaaaatgaagct
aatctggcatcagtaggtgaagatcatatagaggctgacaaaaacaatcttacagcttct
gaagaaactgaagggagcccaagtgttcgtcgttctaatgatagctttgatcatttagca
gtatccgagacccatacacatgatcacaagccaggcccaaaaactgcctctgtgaagtcc
ggaaaggaagatcagacctatgatttcaacgatgaacaggaggatgttgattttgttgct
gccactggtgaggaaaaggatgatgagacgacactgtccgttgaagaggaactggcaaaa
gcagatagtgtggaccctgaggacgagattgctctgctacagaaggagagtgaaatgtct
attgaagaattgcttgcaaggtataaggaggatttcggtggcaaggatttatctgaagat
gattcgtcagatatcaggcagcaagctgattcagatgacgaaaatgttgaatcagccgaa
tgtaagccagctttacagccttgctcagaaaaagatgaaggcacatccaatgaaataaaa
gaagatgatggtaaagataacagtgacaaaattgctgatgcagcagcagcagcaagatct
gcacagccaactggatttacatactctacaacaaaagttagaacgaaattgccgtttctt
ctcaagcattctttgcgtgagtaccaacacattggcttagactggcttgtcacgatgtat
gagaaaaggttgaatgggattttagctgatgaaatgggtcttggaaagacgatcatgacc
atcgctcttctcgcacatcttgcttgtgataaggggatatggggtccccatctgatcgtg
gttccgacaagtgtgatgctgaattgggaaactgaatttcttaaatggtgtcctgcattc
aaaatcctcacctactttgggagtgcaaaggagcgaaaactcaagagacaagggtggatg
aagctgaactcctttcatgtatgcataacaacctataggctagttatccaggacagtaaa
atgttcaagcgcaagaagtggaagtacttgattcttgatgaagcccatttaattaagaac
tggaagtctcagagatggcaaactctgttgaacttcaattctaaacgcagaattttgttg
actggtacaccgctgcaaaatgatcttatggaattgtggtcactgatgcattttctgatg
ccacatgtctttcagtctcaccaggagttcaaagattggttctgtaacccgatagcaggg
atggtggagggccaagataaaatcaatagagaagttattgatcgcttgcataatgtcctc
cgtcctttccttctacgacgcctaaaaagagatgtagaaaaacaacttcctcagaaacat
gagcatgttattttctgcagattgtctaagaggcagcgcaacttgtatgaggacttcata
gcaagcacagaaacacaggctacacttaacagcggaagcttttttgggatgataagtatc
ataatgcaactgcggaaagtttgtaatcatcctgatctctttgagggtcggcctattgta
agttcttttgatatgcctggcattgatgtgcagttgagttcgagaatctgctctcttctt
ttgaaaagtccattttccagagtcgatcttgaagatctgggattcttattcacccatcat
gatttttctatgacttcttgggaaggggatgagatcaagactatttcaacgccctccgat
ttgatcaagcatcgggtggacttgaaggataatccagaagaagttcctctgagtttagta
aaccgcaaaaatctgcaagggacaaatatttttgaagaaattcgtaaggctgtctttgag
gaaagggttaaagaatccaaggatcgggcagcagccattgcatggtggaattctttgaga
tgccggagaaagcctacttactctacatctttaagaactcttttaaccattaagggtcct
cttgatgatatacaccatctcaaagctaatcgtccatcttacatgtactcctcaatgctc
gctgacatagttctttcaccgatcgagcgtttccagaaggtaattgagctagtcgaagct
ttcacgtttgcgattcctgctgcaagagcgccttcacctgcttgctggtgcagcaaaagt
gactctcctgtttttcttagtccatcgtacaaggagaaagttacagatctattgtcacct
cttctgtctccgattaggcctgcgattgttaggagacaagtatattttccagataggcgg
ctgatacagtttgactgtggtaagctgcaggagcttgctatgttactgagaaaattaaaa
tttgggggtcacagagcgttgatattcacgcaaatgaccaagatgcttgacatcttggag
gctttcattaatttatacggttatacctacatgcgtcttgacggttctactccaccagaa
gagaggcagacattaatgcagcggtttaacacaaatcccaagatttttctcttcatcttg
tcaacccgaagtgggggtgtaggcataaaccttgttggtgcagacacagttatcttctat
gacagtgactggaatcccgcaatggatcaacaagctcaagatcgctgccacaggattggt
cagacacgggaagtgcatatttatcggttgataagtgagagcaccattgaagagaatatc
ttgaagaaggcaaaccagaagcgtgcgcttgataacctagttattcagaatggtgaatat
aacaccgagtttttcaagaagctcgacccaatggaattgttctctgggcataaaactctg
actaggaaggatgaagaggaaaagagcaagaattgtgaggcggagctccctctgtcaaac
gcagatgtcgaggctgctttaaaacatgcagaagatgaagcagattatatggctctcaaa
agagtagaagaagaagaagctgtggagaatcaagagtttacagaagaacctatagagaga
ccagaagacgatgagatagtaaatgaggatgacattaagtctgatgagcctgctgatcaa
ggtgtagctgcagctgggtcggctaaagaagaagtttcattggtacctattgataacagg
gatgagagagatgacatcattactttaagccaagaagaagataatgatgtaccagatgat
gtcaagcaaatggctgcagcagccgctgctgctggacaagctatctcatcttttgagaac
cagctgcgtcctattgatagatatgcgattagatttttagaggtttgggaccccatcatt
gttgaggctgctattgaaaatgaagcgggatttgaagagaaagaatgggaacttgaccac
attgagaagtacaaggaggaaatggaagctgaaattgatgatggtgaagagcctcttgtt
tatgagaaatgggacgctgattttgcaaccgaggcatacaggcagcaagttgaagtttta
gctcagcaccagttgatggaagatctagaaaatgaagctagagagagggaagctgcagaa
gaggctgaaaggcgtttggcactgaacgaaagtgcccatgtacttaaacctaagaagaag
aaaaaggtgaagaaagccaaatataaatccctgaaaaaaggatcactcgggtccgagtca
aaacaagcgaagccagtggtgaaagttgaagcttcgagtgatgaagacaatgaagaatgc
ggatatgtgagtagcagtgactcagacatggtctcaccgcgtttgcagaaacgtatgaaa
ggcaagaaaagagaattagtcttcgacagtgatgaagagaagaactcgaagaagaaagca
aagaagcataagaagcctctttcacattcagatatcaaatgcaagactccgcatgatgaa
ctggttccatcaaagccgtctgacagtatggctgttgataatgaattgaaaccggcaaac
aggggtaaaaccctagggaaaaagttcatcatttctatgccaataaagcgtgttcttatg
atcaagccagagaaattgaagaaaggaaatctctggtctagagactgtgttccctcgcct
gattcttggttgcctcaggaagatgctgtattgtgtgctatggttcatgaatatgggtct
aactggagtttagttagcgagactctttacggaatggctgctggtggagcttacagagga
aggcatcgccatcctgcatattgttgtgagagatatagggagcttatgcagcgacatgtt
ttgtctgcttccgacagtgtagtgaacgaaaagaacctcaacgctggttctgggaaggct
ctccttaaagtaactgaggaaaatatgcgggcactcctaaatgttgcagctgagcagcca
gatacggagatgctccttcaaaaacactttacttgcttgctgtcttcaatctggaggacg
tcaacacgctctacaaacaatcaaaagctctccttaaatagtcccatattcaacagacag
gttatgggttctgcgaatcacactcaagaattagcgagaaaaccttttcaggggatgaag
atcaccagcttaagtagcaagttggtagaattcgctctccaggactcaagcacgagccag
ccactcgatactgcttctcgtcctagattacaggaacctatcaataaagtgggattagac
ctaaccttggagttcccacatggcaatgatgattcctcgactcatttcccacccatcata
aagctaactattgatggatcagattcattcaattatgtgaatgaccctccaggggaagat
aagctcaaagtatctcggattgctgcagaggaccgttacaggaatgctgcaaatgcgtgt
attgaagattcgtttggatgggcttcaaacacgttccccgcatatgatccgaagtcgaga
agtggagtgaaagcacagtccctggggaagcacaagctatccgcctcagacacgcccaag
tcctcaaagagcaaacagcgaaaactctcagcagcagaacaatcggaagtgtcatgggtg
aggcgaaatgaccctaatctcaagttcgattttacacctgccgatagagaagaggtggaa
gaggataaggaggtttcagaagagatagagatgataggttgttcacattggtatgatcct
ttgttaacctcaggccttgatgattgctcattagcgtctgaaccctcaggaatagagtag
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integrated database retrieval system
