Brassica oleracea (wild cabbage): 106294638
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Entry
106294638 CDS
T04124
Name
(RefSeq) protein SPA1-RELATED 3-like
KO
K26557
protein SPA1-related 3/4
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106294638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
boe04121
]
106294638
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
106294638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Pkinase
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_SCAP
PK_Tyr_Ser-Thr
WDR90_beta-prop_4th
WD40_like
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
106294638
NCBI-ProteinID:
XP_013585697
UniProt:
A0A0D3CJY4
LinkDB
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Position
C5:39427450..39431096
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AA seq
802 aa
AA seq
DB search
MEDSSNSNSRGFLNTSGVSDRNTEFSPLERVTPRSKPLSVFGSSAHKSSEEDSLGIDDPF
VRSLEWGDVSLRQWLDKPERCVDVFECLHVFRQIVEIVNVAHSQGIVVHNVRPSCFVMSS
FNHVSFIESASCSDSGSADSLEDGPVSHKKREDAGSYNNILERQVEKLEEEKKQPFPMKH
VLAMETSWYTSPEEEFGSTSTCASDVYRLGVLLFELFCPVPSREDKSRTMSSLRHRVLPP
QILLKCPKEASFCLWLLHPEPSCRPSMSDLLQSEFMTEPRDNLEEREAAIELRDKIEEQE
SLLEFLLMIQQRKQESAYRLRDTVSLLSSDIEQVAKRQLVLKQKGSSYSDLGFLEEPSTL
LASRKRFRQVIPPEETDDEESQGRSTFLESSRLMRNFKKLETVYFLTRRRQLKAAASGKS
LTRHSPLSSENGRGSEKSSVSNSAAPKDLSQNDSRQGGWIDPFLEGLCKYLSFSKLRVKA
DLKQGDLLNSSNLVCSLAFDRDGEFFATAGVNKKIKIFECDSIVNNNQDIHYPVVELASR
SKLSSVCWNSYIKSQIASSNFEGVVQIWDVGRSQLVTEMKEHKKRVWSINISSADPTLLA
SGSDDGTVKLWSINQGASIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKI
PLSTMVGHGKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGVNETPLHSFAGHTNLKN
FVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFSNTDSTSGLEVDDASQFISSICWR
GLSSTLVAANSNGNIKILEMVA
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggaagactcttcaaactccaactctagagggttcctcaatacctctggcgtttcagac
aggaacactgagttctcaccgctcgagagagtcacacctcgttcgaaaccgttaagcgtg
tttggtagcagcgcacacaaatccagcgaagaagattctttagggattgatgaccctttt
gttagatccttggaatggggcgatgtcagcttgagacagtggctggacaagcctgaacgg
tgcgtagacgttttcgagtgcttgcacgttttcagacaaatcgtggagattgtgaatgtg
gctcactctcaaggcattgttgttcataacgttagaccttcttgctttgtcatgtcttcg
tttaaccatgtttcattcattgagtccgcttcttgctccgactcggggtctgctgattcc
ttggaggacggtccagttagccataagaaaagagaggacgctggatcctataacaatatc
ttggagaggcaagtagagaagctagaggaagagaagaagcaaccgtttccgatgaaacat
gtgttagcgatggagacgagttggtatacaagccctgaagaggagtttggttctacgagt
acttgtgcttcagatgtctaccgtcttggtgttcttcttttcgagctgttctgtcctgtg
ccttcaagagaagacaagtcaagaaccatgtctagtttaagacatcgtgtgcttccgcct
cagatactgctcaaatgtcctaaagaagcttctttctgcttgtggctcttgcatccagag
ccaagctgtcgaccatcaatgagtgacttgctgcaaagcgagtttatgaccgaaccaaga
gataatctggaagaacgtgaagcagcaatagagcttagggacaaaatcgaggaacaggag
tcgttactcgagttcttgttgatgattcaacagagaaagcaggagtctgcttatagattg
agggatacagtttcacttctttcttcagacatcgagcaagttgcgaagagacagttagtt
ttgaagcaaaagggaagctcatactctgatctcggcttcctggaagagccttcaacatta
ttggcttcaagaaaacggtttagacaagtgattcccccagaggaaacggacgacgaggag
agtcaaggaagaagcacgtttcttgaaagctccaggttgatgagaaacttcaagaagcta
gaaaccgtctactttctgacaaggcgcaggcaactcaaagctgctgcttcggggaagtca
ttaactagacattcaccgttaagcagcgaaaacggaagaggttcggagaaaagctcagta
agcaactctgcagcaccgaaagatctttcccaaaatgattcaagacaaggagggtggata
gaccctttccttgagggtttgtgcaaatacttatcattcagtaagctcagagtgaaagca
gatctaaaacaaggagacttgttgaactctagtaaccttgtttgctcccttgcgtttgac
cgagatggagagtttttcgctactgctggtgtcaacaagaagatcaagatctttgaatgt
gattccattgttaacaataaccaggacattcactatccggttgtggagttggctagccgg
tcaaagctgagtagtgtatgctggaacagctacataaagagtcagattgcatcaagtaac
tttgaaggcgttgttcagatatgggatgttggaagaagccagttggttacagagatgaag
gagcacaagaagagagtgtggtccatcaatatttcatcagcagacccgactttgctagct
agtggaagcgatgatggaaccgttaagctatggagtatcaatcagggagctagcattgga
accatcaagacaaaggccaatgtatgttgtgtccagtttccatcagactcggggcggtct
ttagcattcggctctgcagatcacaaagtgtattactacgatcttaggaatcccaagatt
cctcttagcacaatggttggtcatggtaagacagtgagttatgtcaagtttgtggattcg
tctactcttgtgtcttcttctactgataacacgctgaagctttgggacttatccatgtct
gcctctggtgttaacgaaacgcctcttcattcatttgctggacacactaatctaaagaac
tttgttggcttatcggtctctgatgggtatatagctacaggctcagagactaacgaggtt
ttcgtgtaccacaaggcattcccaatgccggtgatgtcgtacatgttcagcaacactgac
tctacatctggtctagaagttgatgatgcctcacagttcatatcttccatctgctggcga
ggactgtcgtctaccttagtcgctgctaactccaatggcaacatcaagattctggaaatg
gtggcgtga
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integrated database retrieval system