Brassica oleracea (wild cabbage): 106294701
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Entry
106294701 CDS
T04124
Name
(RefSeq) rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106294701
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106294701
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
106294701
NCBI-ProteinID:
XP_013585779
UniProt:
A0A0D3C8W7
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Position
C5:complement(3880572..3884515)
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AA seq
674 aa
AA seq
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MKKLADRLLHRFTNHETASNADHHCSTGTGEGTSGLRHRQDRRMPPQGVRLHISDRYVVM
DNGILQVTLSNPGGIITGIKYNGVDNVLEIRNKETNRGYWDLHWNEPGGKGIFDVISGES
FRVIVETEEQVEISFLRTWNPSLEGKYIPLNIDKRFIMLRGSSGVYTYGIYEHLKEWPGF
ELGETRIAFKLRKDKFHYMAVADDRKRIMPFPDDLCKGRCQTLDYQEASLLTAPCDPHLQ
GEVDDKYQYSCENKDLRVHGWISFDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAV
FHSTHYAGKTMMPRFECGEPWKKVYGPVFIYLNSTAARDDSLFLWDDAKIKMMAEVESWP
YSFVASEDYPKSEERGTARGRLLVCDRFVSNDLISAQGAYVGLAPPGDAGSWQIECKGYQ
FWAITDEAGYFSIDNVRPGEYNLYAWVPGFIGDYHNNIVVSVTSGCKIEMGDIVYEPPRD
GPTLWEIGIPDRKASEFFIPDPDPTLVNRVLVHPQDRFRQYGLWKRYTDLYPNNDLVYTI
GVSDYRRDWFFAHVPRKKGDGHEGTTWQIRFKLENIDQKASYKLRVAIASATLAELQVRV
NDAEATRPLFTTGLIGRDNSIARHGIHGVYMLYTVNIPGNRFVQGDNTIFLKQPRCNGPF
QGIMYDYIRLEGSP
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactggctgatcggctcttgcatcgtttcaccaaccatgaaaccgcttccaac
gccgaccaccactgctcaacagggacaggtgaaggtacaagtggtcttagacatagacag
gatcgcaggatgcctcctcaaggtgtccggctgcatatcagtgaccgttatgttgtgatg
gacaatggaatcctccaagttacactttcaaatccaggtggtatcatcaccggcataaag
tataacggtgttgacaatgtgcttgagattcgtaacaaggagaccaatagagggtactgg
gacctgcactggaatgaacctggaggcaagggaatatttgatgtcatcagtggagagagt
ttcagggtgatagtcgagactgaagaacaggtcgagatctcatttctaagaacatggaat
ccatcccttgaggggaagtacattcctctgaatatcgataaaaggtttataatgcttcgt
ggctcttctggagtttacacgtacggcatttatgaacaccttaaagagtggcctgggttt
gagcttggggaaacaagaatcgccttcaagctcagaaaagacaaattccattacatggcg
gtggcagatgacagaaaaaggataatgccttttccagatgatctatgcaaaggaagatgc
caaactctagattaccaggaagcttccttgctcactgctccttgtgatccacacctacaa
ggcgaagtagatgacaagtaccaatactcatgtgagaataaagatctgagagtacatgga
tggatatcctttgatccgccagtaggattctggcaaattacgcccagtaatgagttccga
tctggcggaccactcaaacaaaaccttacctcacatgttggcccaaccacccttgcagtg
tttcacagtacacattatgcggggaaaacaatgatgcctcgctttgaatgtggtgagcct
tggaagaaagtctatggccctgtcttcatttacttaaactccacagctgctagagatgat
tcactcttcttgtgggatgatgctaagataaagatgatggctgaggttgaaagttggcct
tatagctttgtggcatctgaggactacccaaagtctgaagaacgtggcactgcccgtggt
agattacttgtttgcgataggttcgtaagcaatgatttgatttcagcacaaggtgcttat
gtgggtttggctccacctggtgatgctggttcctggcaaatagaatgcaagggataccaa
ttttgggcgataacagatgaggctggctacttttcgatagacaatgtgcgtcctggcgag
tacaatctctatgcatgggtccctggcttcattggagattatcataacaacattgttgtt
tctgtgacttcagggtgcaagattgaaatgggtgatatcgtctatgaacctccaagagat
ggacctaccttgtgggaaatcggcatccccgaccgaaaagcttccgagttctttatccca
gatcctgatcccacacttgttaacagagttttagtccatcctcaagacaggttcaggcaa
tatggtttgtggaagagatacacagatttgtatccaaataatgaccttgtttacacaatt
ggtgtaagcgattaccgcagagactggttctttgctcatgtgcctaggaagaaaggagat
gggcacgaaggaacaacttggcagattaggtttaaactcgaaaacattgatcaaaaggcg
agttacaaactgcgagtagccatagcatctgcaaccttagcagagttgcaggtgagagtc
aatgatgctgaagcaacacgtcctttgttcacaaccggacttatagggagagacaactcg
attgcaaggcacggtatccacggagtttacatgctgtacacggtgaacataccgggaaac
aggtttgtgcaaggtgataacacgatattcctgaaacagccaagatgcaatggtcccttt
caagggattatgtatgactacattcgtcttgaaggatctccttaa
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