Brassica oleracea (wild cabbage): 106294702
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Entry
106294702 CDS
T04124
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106294702
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106294702
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106294702
NCBI-ProteinID:
XP_013585782
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Position
C5:complement(3874499..3878389)
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AA seq
633 aa
AA seq
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MSSVKLQLQDKGNHVVMDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEESNRGYWDLV
WSGPGTAGTFDVIKGTKFEVIIENEEQIEISFTRKWDPSQEGKAVPLNIDKRFVMLRGSS
GFYTYAIYEHLKEWPAFSIAETRIAFKLRKEKFHYMAITDDRQRFMPLPDDRLPDRGQAL
AYPEAVLLVNPVEPQFKGEVDDKYQYSCENKYITVHGWICTEQPSVGFWLITPSHEYRTG
GPQKQNLTSHVGPTALAVFMSAHYTGEDLVPKFSEGEAWKKVFGPVFVYLNSSTDDDNDP
LWLWQDAKSQMNVEVESWPYSFPASDDYVKAEQRGNVVGRLLVQDRYVDKDFIAANRGYV
GLALPGAAGSWQRECKDYQFWTRTDEEGFFYINGVRPGQYNLYAWIPGFIGDYKYDDIIT
ITPGCYMYMEDLVYQPPRNGATLWEIGFPDRSAAEFYAPDPNPKYINKLYQNHPDRFRQY
GLWERYAELYPDIDLVYVVGSSDYSKDWFYAQVTRKKDSKTYQGTTWQIKFELKDIDKDH
TYTLRAAIASATFAELQVRVNDANASPLFTSGLIGRDNSIARHGIHGLYWLFNVDVAGSK
LVEGENTLFLTQPRSVSPFQGIMYDYIRFEAPS
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgttaaactccagttgcaagataagggcaatcatgtggtgatggataatggc
attgctcgtgttacattatcaaagcctgatggaattgttacaggtatcgagtataatggc
attgataacttgctcgaggttcttaatgaagaatccaacagagggtattgggacctcgtt
tggagtggaccaggaaccgctggtacatttgatgtaataaaaggaacaaagtttgaggta
ataatagaaaacgaagaacagattgagatttctttcacaagaaaatgggatccatcgcaa
gaaggcaaagctgtccctttaaacattgacaaaagatttgttatgcttcgtgggtcgtca
ggattctacacttacgccatctacgagcacttgaaagaatggcctgctttctcaatagct
gaaactagaattgccttcaagctcagaaaggagaagtttcattacatggcaataactgat
gataggcagaggttcatgccattgcctgatgaccggttaccggatagaggccaagctctg
gcttaccctgaagctgttctacttgttaatcctgttgagcctcaatttaaaggagaggtt
gatgataagtaccaatattcatgtgaaaacaaatacattactgtccatggatggatatgc
acggagcaaccatcagttggtttctggctcataactcctagccatgagtaccgaaccggt
ggaccccaaaaacagaacttgacatctcacgttggacccactgctcttgctgtgtttatg
agtgcacactacacaggggaagatttagtgccaaagttcagtgaaggagaggcatggaag
aaggtgtttggaccggtctttgtctatttaaactcctctactgatgatgataatgaccct
ctttggctctggcaagatgctaaatctcagatgaatgtggaagtagaaagctggccttac
agttttccagcttcggatgattatgtgaaagcagagcaacgtggtaacgttgttggcaga
cttctcgttcaagacaggtatgtagataaagatttcattgcagcaaatagaggttatgtt
ggtttggctctgcctggagctgctggttcatggcaaagagaatgcaaagattatcaattt
tggacaagaacagatgaagaagggttcttttacataaatggagtacgaccaggccaatac
aatctctatgcatggattcctggttttattggcgactataaatacgatgacatcatcacc
atcactccaggttgttacatgtatatggaagatcttgtatatcagcctccaagaaatggt
gcaaccttgtgggagattggctttccagatcgatcagccgcggagttttatgctcctgat
ccgaatccaaaatatatcaacaaactttatcaaaatcaccctgacaggttcagacaatat
ggactatgggaaagatacgcagaactataccccgatatagacttggtatatgttgttggc
tctagcgactatagtaaagactggttttatgctcaagtcactagaaaaaaggatagcaaa
acatatcaaggaacaacgtggcaaatcaaattcgaactcaaagacattgataaggatcac
acatatactttacgagcagccatcgcatcggctacttttgccgaactccaagtacgtgta
aatgatgcgaacgcaagcccgttgttcacgagcggattgatcgggagagacaactcgata
gcaagacatggaatacatggattgtactggttgttcaatgttgacgtggctggctctaag
cttgtagaaggcgagaatacattgtttctcacgcagccaaggtccgtaagtcctttccaa
gggattatgtatgactacatccgattcgaagctcccagctaa
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