Brassica oleracea (wild cabbage): 106294914
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Entry
106294914 CDS
T04124
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106294914
03015 mRNA surveillance pathway
106294914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106294914
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106294914
mRNA cycle factors
P-body specific factors
106294914
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
106294914
NCBI-ProteinID:
XP_013586078
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Position
C5:complement(28069564..28072576)
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AA seq
488 aa
AA seq
DB search
MKDPSAKRKVVVRHLPPSLSQSDLLSQIDPRFGDRYNWVSFRPGKSSYKAQKYSRAYFGF
KAPEDVYDFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYLE
FLMLIAQPVENLPSAEIQLERREAELSGASKPAPIVTPLMEFIRQKRATVIGSQQQGLDV
RRGGRRARAVSSNKPASRPSKRNSEKKKYVEKDNSKSVSRKATSDAGSSKQDYIPSGKDI
PVTETASVMDSSLPGIALTMDSGKKKILLLKKDRDNPLNSTAQPEQQMETNLSGSSLTSR
QDQKIVVGGRLIKGILLRNEPRPSQSSSFVQPESRVEPLEAENSKRPPRPANTRAGKDNQ
ISGTNSEKQERRPRNKERPDRVVWTPLRRSDGSSISEDQLSSSSANNGEIKERMLLQRSG
EVVNSSGGHSLENGSTRHSGRRVGARNRKEEGFAMTGEGKSSRRGGGGGGGPNSHEKQMW
IQKSSSGT
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgtcagcgaagaggaaggtggttgttcggcacttgcctccttctctttct
cagtccgatctcttatcccagatcgaccctcgtttcggtgatcgttacaattgggtttcc
tttcgtccaggaaagtccagctataaagctcagaagtattcacgggcctactttggtttc
aaggcccctgaagatgtttacgactttgctgcttttttcaacggccatgtgtttgttaat
gaaaagggtgctcagttcaaggccatagttgaatatgctccttcacagcgtgtgcccaaa
ccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgattatcttgag
tttcttatgcttattgctcagcctgttgagaatctccctagtgctgaaatccagttggaa
agaagagaagctgagctgtctggtgcttcaaaaccggctccaattgttacccctcttatg
gaattcatacgtcaaaaacgtgctactgtgattggatcccagcaacagggtttagatgtt
cgaagaggtggcagaagagccagggcagtctcttcaaacaagccagcttcaaggccctca
aaacgaaactctgaaaagaaaaagtatgtggaaaaagacaattcaaaaagcgtatcccgg
aaggctacatcagacgccggcagctccaagcaagattacattccaagtggaaaggacata
ccagtaactgaaactgcctctgtcatggatagctctctcccagggattgcgttgactatg
gattctgggaagaaaaagatcttgctcctgaaaaaagaccgagacaatcctcttaactct
acagcacaaccagaacagcagatggaaactaatctttctggaagctccttgacttcaaga
caggatcagaagattgttgttggtgggaggttgatcaagggaatacttctgagaaatgag
ccgcgacctagtcagtcctcatcttttgtccagccggagtcaagagtggaacccttggaa
gcagaaaactccaagcgtcctcctcggccagcaaacactcgagcagggaaagacaatcag
atttctggtaccaacagtgagaagcaagagaggcgtccaagaaacaaggagaggcctgat
cgtgttgtgtggactcctcttcgtcgctctgatgggtccagtatcagcgaggatcaactg
tcatcttcatcagcaaacaatggagaaattaaagagaggatgttgttgcaaagatctgga
gaagtggtgaactcctccggtggacactctcttgagaacggttctacaagacattctggt
cgccgtgttggagctcgcaacagaaaagaagagggttttgcgatgactggtgagggtaaa
tcatcccggagaggaggtggaggtggtggtggtcccaattcacatgagaagcaaatgtgg
atccaaaaatcatcgtctggtacttga
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