Brassica oleracea (wild cabbage): 106294928
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Entry
106294928 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC106294928
KO
K23719
nuclear mRNA export protein SAC3
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106294928
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
106294928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAC3_GANP
INT10
Motif
Other DBs
NCBI-GeneID:
106294928
NCBI-ProteinID:
XP_013586094
LinkDB
All DBs
Position
C5:44627788..44635634
Genome browser
AA seq
1650 aa
AA seq
DB search
MAFKPFGKDVGPAMSSKQPSPFTTFGASDPTQSTRCLLVLFVILGLCSLFLGGLSCSDSP
IQPPTYQNHSGYAGPSFGPGGIQSGPPIQRAPSPSASQNPSPRGLQSSPAMNRTSPPVAF
QNPSHSSGQSYRPGGTQRSPGPVNVHWGPEAFPRPIPSVRPYQFPGVQRPTLNPQFGHDE
SRNFQKDHSERSLATSSASTSHTLSRSGTDVVEIGRSQDSKRKSRSDVLPDRSLGVSRRN
HSPGSGFGIGRLVDDFQQSSSQTWIRSPSSADNNPVRSRIIPNRLIHQEQSPSSSFPYAN
EAAEIQEATKRKSSAIAPSDSFLHNNPVFSQDDTRRSSTSPPGTKSFMLSRSSDSQFTGQ
SSVNNFSNAVKTSSSPATKRTRSPPFYPVEDDIQGNSFLSQSFTEGEEQARAKRLARFKG
ELDPVPARPVDTQLAKSAVNKTXKLLDNKQIFNSQESNRDVLKGDALSDFESSEQPSLIV
GLCPDMCPESERGERERKGDLDHYERVDGDRNQTSKSLAVKKYTRTVEREAILIRPMPIL
QNTMEYLLSLLDRPYNENFLGMYNFLWDRMRAIRMDLRMQHIFNREAITLLEQMIRLHII
AMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGTTIPTEKEFRGYYAL
LKLDKHPGYKVEPSELSLDLANMTPEIRQTSEVLFARSVARACRTGNFIAFFRLARKASY
LQACLMHAHFSKLRTQALASLHAGLLNNQGLPVSDTSKWIGMEEEDIEALLEYHGFSIKV
FEEPYMVKGDLFLHADKDYKTKCSKLVHLKKSRTIVEDVSAPSIEDVFAPSPLSXTEANK
GYQQETPPPQSLKKQTSLRLVDKVMTDSKTSLLLEEDKPMRTSVINPVRPSDEKPAVDQQ
NRNHFTPAGEFHSPGFPQAESLNLKKQPNGGHTSTSPAEIKFPFAEHMQTNLMPGSILQQ
SPFAVPMESVPVTTISESPTRVENISALEESVPEAAMTVTLEEGFDDIEQEDEDGHEDIT
SQYEEEVAKAKLKLIIRLWKRWSSRQSELRERRQVAAAAALNSLTLGTPIRLSKTDHXRA
CGEFDIDQAMKRRFEEREKSWSRLNISDVVADTLVERNPDSKCIWWKVILCTQSKSVDTS
SQNTHSAATRWLSSKLIPDTEHSISDDNLLFSSPGVSVWNKWVASGSDSDSRCCLSVARD
VEADNDPRGASAVLFLASKSIPLNLQREHLNRILESVPNRSLLPLLVLTSSSNGESVGPD
TNLVSELGLHDINKSKIASFITVVSIANYSQKGHEVRFFSDSRLRDGLKWLAGNSPPLPN
LHHVKPRELVLTHFSFSLELLKQMSDQEVGPNICISAFNEALETSKRNITSAAEANSICW
PGPETMLLDGNRKEHLMAKRYLPELDWSSAESIEQLNSVLENCKLPCFEDDFKWLTLGCA
SGAEIENYTQRLEGCLVEYLTQTSNLMGDSLASKEAGVMLQRNTRLELHNSSYYHIIPRW
IGIFQRIFSWRIIGVLDSSSSSAYVLKSDLTMSASSYADKFLSEDSSSRPNLPLLHEMVQ
ISCTPLKSSPKVESVQTERLVDDHRDIDESMLEKSREASRRIDMMITEYDDELAAEKKTV
KDRESERLNELLEKCNLVQNSIAEKLCIYF
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaagcctttcgggaaagatgtaggaccggcgatgagctccaagcagccgtcg
ccgtttacaacgttcggcgcttctgatcctactcaatccaccaggtgtctgctggtgttg
tttgtaatcttaggtttgtgctctcttttcttggggggattgtcttgtagtgattctccg
attcagccaccgacatatcaaaaccattcagggtatgcaggaccatcttttggaccaggt
ggtattcaaagtggtcctccaatccagcgagcaccgtctccttcagcttctcaaaaccct
tcaccacgtggactacaaagtagtcctgcaatgaatcgaacatcaccacctgtggctttt
caaaatccctcccactcctcaggacaatcttaccgacctggtggaactcagaggagcccc
ggacctgtcaatgtacattggggtccagaagcttttccacgtccaatcccctctgtgaga
ccttaccaatttcctggagttcagaggcctactttaaatcctcagtttgggcatgatgaa
tctaggaatttccaaaaggatcatagtgaacgtagtctagccacgtcttcagctagtaca
tcacacactctttccagaagtggaactgatgttgttgagattggtcgatcacaagattca
aaaaggaaaagtcgttcagatgttcttcctgatcggagtttaggggtttctcgaagaaac
cattcgccaggatcaggttttgggattggcagattggtagatgatttccagcagtcatct
agtcaaacttggatacgctctccctcttccgcggacaataatccggtgaggtcgaggatc
attcccaatcggttgatccatcaggaacagagcccaagctcttcattcccttatgcaaat
gaagcagctgaaatccaggaagccacaaaaagaaaatcttcggcaatagcaccttctgat
agttttcttcataacaaccctgtattttctcaagatgatactcgaaggtcatcgacatct
cctcctggcacaaagtcatttatgctttcaagaagctcagattcccaatttactgggcag
tcctctgtaaataatttcagtaatgcggttaagacaagtagttcacctgcaacaaaaagg
acgagatctccacctttttatccagtggaggatgatatccagggaaactcttttctttct
caaagctttactgaaggagaagagcaagccagggcaaagagactggcccgcttcaagggt
gaactggaccctgttccagcccgacctgttgatactcaacttgctaaatcagctgtaaat
aaaactnngaagcttctggacaacaagcaaatattcaattcacaggaatcaaatagggat
gtcctcaagggagatgctttgtctgattttgaaagctcggagcagccttctcttatcgtt
ggattatgccctgacatgtgtcctgagtcagaacggggggagcgtgaaaggaagggtgac
ttggaccattatgagcgtgtggatggagataggaaccagacgagcaaatcccttgctgtg
aagaaatataccaggacggtggagcgagaagccattttgatacgacccatgccaatcctg
cagaataccatggaatatttgctgagtttgctagaccgcccttacaatgaaaactttctt
ggcatgtataatttcctatgggataggatgagagctattcgaatggatctaagaatgcaa
catatattcaaccgagaagctattactttactggagcaaatgataagacttcacatcatt
gcaatgcatgagctatgtgaatatactaaaggagagggcttttcggaggggtttgatgca
cacctgaatattgagcagatgaacaagacatctgttgagttgtttcaaatgtatgatgat
cacaggaagagaggaacaactattcctacagaaaaagagttccgtggctattatgctctt
ctcaaactcgacaagcaccctggctacaaggttgaaccgtctgagctttctcttgatctt
gccaacatgactccagaaataaggcaaacttcagaagttctctttgcccgcagtgtagcc
agagcttgtagaactggcaacttcattgccttctttcgcctcgcacgaaaagcaagttat
cttcaagcatgtctaatgcatgctcatttttcaaagctaagaactcaggcgcttgcttct
ctgcacgcgggtctcctaaataatcagggtctcccagtttcagatacttcaaagtggata
gggatggaggaagaggacatagaagccctgctggagtaccatggattttcgataaaagtg
tttgaagagccatacatggtaaagggtgacctgtttctccatgctgataaggactataaa
acaaaatgctccaaacttgttcacctgaaaaagtcaagaaccattgtggaagatgtttct
gctccatcgatagaagatgtttttgctccctctccgttgtcanngacagaagcaaataaa
ggatatcaacaggaaacaccgcctcctcaaagtcttaagaaacaaacatcactgcgtcta
gttgataaagtaatgaccgattccaagacttccctcttactggaggaggacaagccaatg
aggacatctgttataaatccagtgcggccatctgatgaaaaaccagcagtagatcaacaa
aaccgaaatcactttacaccggctggtgaatttcattctcctggatttcctcaagctgaa
tccttgaatttgaagaaacaacctaatggcggccacactagtacatctcccgcggaaatt
aaatttccatttgcagagcatatgcaaacgaatcttatgcccggttctattttgcaacaa
agtccgtttgcagtgcctatggagagtgtgcctgtaactaccatttcagagtctccaacg
cgtgtagaaaacatatctgctttggaagaatcagtacctgaagctgcgatgactgttacc
ttggaagagggtttcgatgacattgaacaggaagacgaggatggacatgaggacatcaca
agtcagtatgaagaggaagtggcgaaggctaagctcaagttgatcataagattatggaag
cggtggtcttcacgtcaaagtgaattgcgggagcgtcgacaagtagctgcagctgctgca
ctgaattctctaaccctgggcacccctatccgactcagcaaaactgatcactagagggcg
tgcggtgagtttgacattgatcaagcgatgaagaggagatttgaagaacgggaaaaatca
tggtcaaggctgaatatttcagatgtggtagctgatacattagtcgaaaggaatccagac
tcaaaatgcatatggtggaaggttatcctatgtactcagagtaaatcagttgacacatca
agtcaaaacacacattcagcagccactcgatggttatcatcaaagcttatccctgacaca
gaacatagtatctccgatgataatctactgttttcatctcccggtgtgtcggtatggaat
aaatgggttgcaagtgggtctgattcagattccagatgctgtctctcagtagctagggat
gtagaagctgataatgatccacgtggcgcaagtgcagttctcttccttgcatctaaaagc
atccctctgaatctccagagagaacatcttaaccgcattctcgaatcagtacctaaccgt
tcactccttccccttctcgttctaaccagctcaagcaatggagaaagcgtgggtcccgat
acaaatctcgtctctgagctaggcctccatgatatcaacaaatcaaagatagcaagcttc
atcaccgtcgtttctatcgctaattactcccagaagggacacgaagttcgttttttcagc
gattcgcggctaagggacggactcaaatggctcgcgggaaattcacctccgctaccaaat
cttcatcacgttaaaccgcgggaacttgttctgacgcattttagtttttctctagagttg
cttaagcagatgtcggatcaggaagttggtccgaacatatgcatatcagccttcaacgag
gcgctggaaacatctaaaagaaacatcacttctgctgctgaagcaaattcgatctgttgg
cctggccctgagacaatgttgctcgacggtaatagaaaagaacatttaatggcgaagagg
tatctacctgaactagactggagcagtgcagagagcatcgaacaactcaactccgttctc
gagaactgtaagcttccttgttttgaagatgattttaaatggttaacactaggatgtgct
tcaggcgctgagatagagaactacacgcaacggcttgagggatgcttagttgagtacttg
acacagacaagcaatctcatgggagactcgttagccagcaaagaagcgggagtgatgcta
caaagaaacactagactcgaactccataactcaagctactaccatatcatcccgagatgg
atcgggatcttccagaggatcttcagctggcggataatcggcgtgctagattcatcttct
tcctcagcttacgtactcaagtccgatctcaccatgtcagcttcaagctatgctgataag
ttcttgtcggaagattcatcttctcgtccaaatcttccattgcttcacgaaatggtccaa
atcagctgcacccccttgaagtcgtctcctaaagtagaatcggttcagacagagaggctt
gttgatgatcatagagacatagatgagtcgatgttagagaagagtagagaagcttcaaga
aggattgatatgatgataactgagtatgatgatgagttagctgcggagaagaagacggtg
aaggatagagagagtgagagattaaatgaattgttggagaaatgtaacttggtacagaac
agcatagccgagaagctctgcatttacttttga
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integrated database retrieval system
