Brassica oleracea (wild cabbage): 106294929
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Entry
106294929 CDS
T04124
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
boe03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106294929
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106294929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106294929
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
106294929
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
106294929
NCBI-ProteinID:
XP_013586095
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All DBs
Position
C5:complement(5072803..5075506)
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AA seq
576 aa
AA seq
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MNQENAGYGDNQKLLHQGSGTIPALADEELLGEDDDYDDLYSDVNVGESFFQAHNQPQAP
AQVGGSIQAQNSNVSEPRMAVVSGGGAVEGKYHNGISGPETRSDAYPQGSSFGPKGMNVD
VQSNQPSKVNPQGSTSIVLNTHSFSGSAVNVPEPPPVHNNPYGGAPQGAQQIPVSQTSVN
PSAMVNRSPTQPFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKS
KGYCQVEFYDSAAAAACKEGMNGFVFNGKACVVAFASPETLKQMGANFTGRNQGQNQMQN
RRPLNEGMGRGNNNNNNNNMNTQNGDGGRNYGRGGGFARGGQGMANRGGHWGGAARGRGM
NNMANGAGAGPYGGPGLAGPAFGGMMHPQGMMGAGGFDPTFMGRGGGYGGFPGLAYPGMP
QPYPGVNPMGMVGIAPHVNPAFFGGAGMGTMGNAGMNGVHAAGMWNEASGGGGGGEEGGS
EYGGYEDENQEKEEKPSREKERATAERDWSESSGGDRRHKSHREEKDSHREYKHRDSEEY
DRGQSSSKSRSRSRMSEDDHRSRSRDADYGKRRRGD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaaaacgctggttatggagataatcagaagctacttcaccagggaagcggg
actattcctgctcttgctgatgaagagctgttgggagaagatgatgactacgatgatctc
tatagcgatgttaatgttggtgagagcttcttccaagctcataatcaacctcaagcacca
gctcaagtcggtggaagtattcaagctcagaatagtaatgtttctgaaccgagaatggca
gttgtatccggaggaggtgcagttgaagggaagtatcataatgggatcagtggacctgaa
acaagatcagatgcttatccacaaggatcttcttttggacccaaagggatgaatgttgat
gtccagtccaaccaacccagcaaagtcaatccacaaggatcaacatctattgtgttgaac
acgcatagtttttcagggagcgcggtgaatgtgcctgagcctcctcctgtgcataataac
ccttatggtggtgctcctcaaggtgctcagcagattcctgttagccagacgagtgttaat
ccaagcgcaatggtgaacagaagccccacgcagccgtttgttgtggacaatgggaacacc
atgcttttcgtgggggagttgcattggtggacgacggatgcagagattgagagtgttctt
tctcagtacggaagagtgaaagagatcaagtttttcgacgagagagttagtggcaaatcc
aaagggtattgtcaggttgagttttatgattcagctgctgcagctgcttgcaaagaagga
atgaatgggtttgttttcaacggtaaagcgtgtgttgtagcctttgcttctcctgaaacg
ttgaagcagatgggagctaatttcactgggaggaaccaaggacagaaccaaatgcaaaac
agaaggcctttgaatgagggaatgggaagaggcaacaacaacaataacaacaacaacatg
aatacgcaaaatggagacggtggaagaaactatgggagaggtggtgggtttgcacgtggt
ggccaaggaatggcaaaccgtggaggtcattggggtggtgcagcgagaggcagagggatg
aacaacatggctaacggtgctggtgctggaccgtatggcggccctggacttgctggtcca
gcgtttggtggtatgatgcatccacagggtatgatgggagctggtgggtttgatcctaca
ttcatgggtcgtggcggtggttatggagggtttccaggtcttgcttaccccgggatgcct
cagccttatccaggtgttaatccaatgggaatggtcgggattgctcctcatgttaatccc
gcctttttcggcggcgcggggatgggaacgatgggtaacgcagggatgaacggagttcat
gcagcagggatgtggaacgaggctagtggaggaggtggtggtggtgaagagggtggctct
gaatacggtggatatgaagatgaaaaccaagagaaagaagagaagccatcacgtgagaaa
gaacgagctactgcggaacgtgactggtctgagagcagtggtggtgatagaagacacaag
agtcaccgtgaagagaaagatagtcaccgcgagtataagcaccgtgattccgaagagtac
gatagaggacagtcttcttcgaagtctcgaagcagatcaagaatgtcggaagatgatcat
aggtccaggtcaagagatgcagactacggaaagagaaggcgtggagactga
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