Brassica oleracea (wild cabbage): 106294991
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Entry
106294991 CDS
T04124
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106294991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106294991
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106294991
mRNA degradation factors
5'-3' decay
Decapping complex
106294991
SSDB
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Paralog
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Other DBs
NCBI-GeneID:
106294991
NCBI-ProteinID:
XP_013586186
UniProt:
A0A0D3CHA5
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Position
C5
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AA seq
785 aa
AA seq
DB search
MERSDSRDLYNFVRSSSDSNSKLFDASQYEFFGQNLDEMSLGGIDDDEVVAPVLGHTSPD
DDEYHLFNKGEGAGLGSLSDMDDLATTFAKLNRNVTGPKHLGVIGDRGSGSFSRESSSAT
DWTHDTELTNWLDEQDQEANRWSSQPQSSAHSQPLYRTSSYPQQPPPLQHYNSEPIIVPE
STFTSFPPPGSRSQQTSPGSLHRAPSLPSGSQMNFTPPSPLSNSRFHLSGPSHGPHYGGN
LARYASCGPTLGNVVQPHWVTDPGLLHGDHSGLLHSLAQQQQFPPRIDLMSQHMMALQQR
QSYAQLAALQSQLYRSYPSPSRKVSFGGGEVREQHKHKSSHRSRKNKGISQQASDAASQK
SESGLQFRSKYMTSEEIESILKMQHSNSHSNDPYVNDYYHQARLAKKSSGSSRAITLFYP
SQLKDHHHQPKSRNNSSEQHQQQVHVDALGKITLPYIRRPRALLEVDSSSSPGSNDQKGS
GKHLEQEPLVAARVTIEDALGVLIDIVDIDRTLQSTRPQDGGAQVKRKRQILLEGLATAL
QLADPFSKTGQKSGLTAKDDVVFLRIATLPKGRKMLTKYIQLLVPGTEIARVVCMAIFRH
LRFLFGGLPSDTLAAETIANLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSS
GDGASVVLISLLERAAEVVVVPRAVHGSSNDGLWRASFNEFFNLLTKYCRSKYETIRRQN
QGSAADVLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRKPSAVSESASHARGGQINS
ESVMG
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgattccagggacttgtacaactttgttcgctcttcctcagattcaaat
agtaagctctttgatgcatctcagtatgagttttttgggcaaaaccttgacgaaatgtca
ttaggaggcattgacgatgacgaagtggtcgctcctgttcttggacatacttctcctgat
gatgacgagtatcacttgtttaataaaggagagggtgcaggtttagggtcattatctgac
atggatgatcttgccacgacttttgcaaagctaaatagaaatgtcacaggacccaaacac
cttggagttattggtgacagaggatctggttccttttcaagagagagttcttctgccacc
gattggactcacgatacagagctcacaaactggttggacgagcaagatcaagaggctaac
agatggtcctcgcagccacagtcatctgctcattcacaacctttatacaggacatcctct
taccctcagcagccaccaccgttgcaacactacaatagtgaaccaatcattgtaccagaa
tcaactttcacctcctttcccccgccaggcagcagatctcagcagacttcacctggaagc
ctccaccgcgctccttctcttcccagcggttctcagatgaatttcaccccaccttccccg
ctgtcaaactctagatttcatctttcaggaccctcacacgggcctcactatggtggtaat
ttggctagatatgcctcgtgtggtcctacccttggtaacgttgtgcaacctcattgggtc
actgatcctggtcttctccacggagatcattctggtttattacatagtctggcgcaacaa
caacaattccctcctcgaattgatcttatgtcgcaacatatgatggctctccagcagaga
caatcgtatgctcagcttgcagcgctacagtctcagctgtacaggtcttatccatcacca
tcacgtaaagtctcttttgggggtggtgaagttagggaacaacacaagcataagtcttct
cataggagtcgaaagaacaaaggcatatctcaacaggcatcagacgcagctagtcagaaa
agcgagagtggattgcagtttagatcaaagtacatgacttcagaggaaatagagagtata
ctcaagatgcagcactctaattcacacagcaacgatccttatgtcaatgattattaccac
caagctcgccttgccaagaagtcttctggatctagtagagcaatcactctcttctaccct
tctcagttgaaagaccaccaccaccaacctaagtcccgtaataatagttctgaacagcat
caacaacaagttcatgtagatgctcttgggaagatcacgcttccctatattcgcaggcca
cgtgccttgcttgaggttgactcttcttcttctcctggttctaatgatcaaaagggctca
gggaaacatttggagcaggaaccacttgtggcagctagggttacaattgaagatgctcta
ggagttcttatcgacatagttgacattgacaggactctccagtccacaaggcctcaagac
ggaggcgctcaggtgaagagaaaacgccagatcctccttgaaggtctagcgacggcactt
cagcttgctgatccgttcagcaaaaccggtcagaagtcagggctgactgctaaggatgat
gttgtgtttctgcgtatagcaactcttccaaagggtcggaaaatgcttacgaagtacata
cagcttctagttccaggcactgagattgctcgagttgtctgtatggctatattccgccac
ttgaggtttctcttcggcggcttgccttcggatactctagcagcagagacgattgctaat
cttgccaaggcagtcacggtctgtgttcaagctatggacctccgagcgctgagtgcttgc
cttgcagctgtggtttgttcttcagagcagccacctctgcgtcctattggaagctcttct
ggggatggtgcttcggttgtcttgatatcacttctcgagagagctgctgaagtagtggtg
gttcctcgagccgtccatgggagctctaatgatggcctatggagagcctcgtttaatgag
ttcttcaacctgcttactaaatactgcaggagcaagtatgagacgatccgtaggcagaac
caagggagtgcagcggatgttttggagctggcgataaagagagaaatgcccgctgagctt
ttacgtgcgagcctccgtcataccaatgacgaccagaggaactatttgttaaactttggt
cgtaaaccgtcggccgttagtgagtctgcgtcgcatgcaaggggtggtcagatcaactct
gaatctgtgatgggttga
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