KEGG   Brassica oleracea (wild cabbage): 106295016
Entry
106295016         CDS       T04124                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03030  DNA replication
boe03410  Base excision repair
boe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106295016
   03410 Base excision repair
    106295016
   03420 Nucleotide excision repair
    106295016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:boe03032]
    106295016
   03400 DNA repair and recombination proteins [BR:boe03400]
    106295016
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     106295016
DNA replication proteins [BR:boe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    106295016
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      106295016
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf_DPOE_2 zf-DPOE DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 106295016
NCBI-ProteinID: XP_013586221
LinkDB
Position
C5:3129576..3145440
AA seq 2181 aa
MSGDNRRWDRKDSRRSNTQKVVKTAEDELESKLGFGLFSEGETRLGWLLTFASSSWEDPD
TGKTYSCVDLYFVTQDGFYFKTKYKFRPYFYAATKEKMELEVEAYLRRRYERQVADIEIV
EKEDLDLKNHLSGLRKKYLKVSFDTVQQLMEVKRDLSHIVERNQAKFDALEAYESILAGK
REQRLQDCLDSLVDLREYDVPYHVRFAVDKDVRSGQWYNVSISSTDVTLEKRTDILQRAE
VRVCAFDIETTKLELKFPDAEYDQIMMISYMVDGQGFLIVNRECVGEDIEDLEYTPKPEF
EGYFKVTNVSNEVELLRKWFSHMQEVKPGIYVTYNGDFFDWPFIERRASHHEIKMNEELG
FRCDHNQGECRAKFVCHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVQF
AMEKPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMV
EAYNANVICPNKNQADPEKFHKSHLLESETYIGGHVECLESGVFRSDIPTSFKLDTSAYQ
QLIDNLDRDLEYAITVEGKMRMDSVSNYDEVKEKIKEKLEKLRDYPIREEGPLIYHLDVA
AMYPNIILTNRLQPPSIVTNEICTACDFNRPGKTCLRKLEWVWRGVTFMAKKSDYYHLKK
QIESEFVDTGANIQSSKSFLDLPKVEQQSKLKDRLKKYCQKAYRRVLDKPGTEVREAGIC
MRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLA
HKCILNSFYGYVMRNSRGARWYSMEMAGVVTYTGAKIIQNARLLIERIGRPLELDTDGIW
CALPGSFPENFTFKTIDMKKFTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYESHSEC
SIEFEVDGPYKAMIIPASKEEGVLLKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQA
ELFDKFLHGSTLEECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYG
EQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVACEPKGSPVSERAVPVAIFTLSKTEPE
RMKFYLGKWCKQRLSSDHKVDIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVL
HPDWLHKKVREKDDKFRQRKLADMFSSANKDGVLDKNHSVAQDDVNDIEDFCKENKPSVK
GPKPVARSYEVNKEQFGREQQESNDPKCDDDISFENIDKNVDYQGWLEVRKRKWKGIVEK
KKKRRLGDQRSLKQIESHEIKKKVSQVRRGVGSFFRRPEEALTSSHWQIIQLVPSPQSGQ
FFAWVVVEGLMLKIPLTIPRVFYINSKAPIDGKFPGKCVNKILPHGKPCYNMIEVEIQEE
QFRKESKKLAALLADPEIEGIYETKVPLEFSAICQIGCVCKIDNTAKRRNTQDGWKVGEL
HMKTTTECRYLERSIPLLYLYHSTSTLRAIYVLYCHASKLMSAVVVNPYGDKELLPSALE
RQFRDGCQELSLESLSWDGIVFQVDYVDHAEAAEKIIQKAISEYREENSGPTVVVVECPD
FNSIKDGIKALDDFPCVRIPFNGDDNSYQPVSWQRPAAKLAMFRCAAAFQWLDRRISQSR
YAHVPLGNFGLDWLTFTVDIFLSRALRDQQQVLWVSDNGVPDLGGLNNEETFFADEVQQT
SLVYPGAYRKISVELKIHHLAVDALLKSNLVSEMEGGDFLGFEQDGNPRGSSSNANSSFD
ETTGCAQAFRVLKQLIHSCLTDVCKSRNIYADSILQRLSWWLCSPCSKLHDPALHLMLHK
VMQKVFALLLTDLRRLGATIIFADFSKIVIDTGKFDLSAAKAYCDSLLTAVGNSDIFEWI
SLEPAHYWHSLLFMDQYNYAGIQATDDEISPDEVTIEPKWSVARLFPEYIQRDFVIIVAK
FIFDPWKFSLEKKRGSSESLEAQMVEYLKEQIPSSFFNMLVAKINDIVSHMKEMDVSDAS
RDSQAPKRDYALELVQTICAVMGLDQNVEQDVRVMKRNLLKYINVKEFAAEAEFLDPGPS
FILPNVACSNCDAYRDLDIGRDPALLTEKEWCCVDSQCGKIYDREQMENSLLQMVRQRER
MYHMQDLVCIRCNQVKAAHLTEQCECSGSFRCKESGSEFLKRMEIFLDIAKRQKFKLLEE
CTSWILDPTGSWQTNTGRHHS
NT seq 6546 nt   +upstreamnt  +downstreamnt
atgagcggagataatcgaagatgggatcgaaaggactcgcggagatcgaatacgcagaaa
gtcgtgaaaacggcggaagatgagctcgaatctaaactcggatttgggcttttctccgaa
ggggaaacgcgcctcgggtggctactcacattcgcatcatcatcttgggaagatcccgat
actgggaaaacctatagctgtgtggatctttactttgttactcaggacgggttttatttc
aagacaaagtacaagttccgcccttacttctatgcggctacgaaagagaaaatggaattg
gaagttgaagcgtacttgagacggcgatatgaaaggcaagttgctgatattgagattgtt
gaaaaagaggatcttgatcttaaaaatcatctatctggcctgcgaaagaaatacctaaaa
gtatcatttgatactgtgcaacaattgatggaagtcaagagggatctgtcgcatattgtc
gaacgaaaccaggcaaaatttgacgcacttgaagcatacgaatccattttggctggaaaa
cgagaacaacgtcttcaagattgcttagactctttagtggacctccgcgagtacgatgtt
ccttatcatgttcgatttgcagttgataaagatgtgcggagtgggcaatggtacaatgtc
agtatttccagcactgatgtcacactagagaagaggacagatattctccagcgtgcagaa
gtccgtgtttgtgcattcgatatagagacaacgaagcttgagttgaaatttccggacgct
gaatatgatcaaattatgatgatatcttacatggtcgatgggcaaggttttctaattgtt
aacagagagtgtgttggcgaagacatagaagatctggagtatacacccaaaccagagttt
gaaggatatttcaaagtcactaacgttagcaacgaggttgaactccttcgaaaatggttt
tcccatatgcaagaggttaaacccggtatttatgttacatataacggtgattttttcgac
tggccatttatagaacggagagcatcccatcatgagatcaaaatgaatgaggagttggga
ttccgttgtgatcataatcaaggtgaatgtcgagctaaattcgtttgccatttagattgt
tttgcttgggtgaaacgggatagctatcttcctcagggaagccatggtctgaaggccgtt
acgaaggcgaaactgggctatgatccactggaagtgaacccagaagacatggttcagttt
gccatggaaaaaccacagacaatggcctcctattctgtctctgatgctgttgcaacttat
tacctatacatgacatatgttcacccgttcattttctctctcgcaactatcatcccgatg
gtccctgatgaggtcttacgtaaaggaagtggaaccctttgtgaaatgcttctgatggtt
gaggcgtataacgcaaatgttatatgtcccaataaaaaccaagctgaccctgagaagttc
cacaaaagtcaccttcttgaaagtgagacatatattggtggccatgtagagtgcctcgaa
agtggtgttttccgatctgacattccaaccagttttaagctagacacatcggcataccag
caactgatcgataaccttgaccgggatctggagtatgctatcactgtagaagggaaaatg
agaatggattcagtttccaattatgatgaagtgaaggaaaaaatcaaggaaaagctggaa
aagttacgagattaccctatacgtgaagagggacctcttatttatcaccttgatgttgca
gctatgtatccgaatatcatcttaacaaataggcttcagccaccatcaatagtgacgaat
gaaatttgcaccgcatgtgatttcaaccgcccgggaaaaacgtgtcttcgaaaacttgaa
tgggtttggcgtggggtgacattcatggcaaagaaaagtgattattaccatctgaagaag
cagattgagtccgaatttgttgatactggtgcaaatattcagtcttcaaaatctttcctt
gatctaccaaaggtggaacaacaatctaaactaaaagatagactgaaaaaatattgtcaa
aaggcatatcgacgagtacttgacaagccaggcactgaagttcgtgaggctgggatatgc
atgagagaaaatccgttttatgtagacactgttcgaagctttcgagataggaggtatgaa
tacaaaacacttaacaaggtctggaagggaaagttatcagaggccaaggcaagtggcaat
tcaatcaagatccaggaagcacaggacatggtagtggtttacgattccttgcagctagct
cataagtgtattcttaattccttctatggatatgtcatgcgaaattccaggggtgcaaga
tggtactctatggaaatggctggtgtagttacctataccggagccaaaatcatccagaat
gcccgtttgcttattgagcgtattgggagaccacttgagttggatacagatggtatatgg
tgtgctctccctggatcttttcctgagaactttacttttaagacgatagacatgaagaaa
ttcacgatctcttatccgtgtgtaatgcttaatgttgatgtggctaaaaataatacaaat
gatcaatatcagactcttgtagatcctgtacgcaagacgtacgagtcgcatagtgaatgc
tccattgaattcgaagtggatggaccgtacaaggcaatgattattcctgcatcgaaagaa
gaaggagtcttacttaagaagcggtatgctgttttcaatcatgacggaaccttagcagaa
ctcaagggatttgagatcaagcgtagaggggagctgaaactcattaaagttttccaggcc
gagctttttgacaaatttctccatggatcaacacttgaagagtgttattctgctgttgca
gccgttgcaaatcggtggcttgacctactcgataatcaaggaaaagatattgccgatagt
gaactactagattatatatcagaatcaagcaccatgagcaaatccttagcagattatggt
gagcaaaagtcatgtgcagtgaccacagcaaaacgcctggctgattttcttggtgataca
atggtcaaagataaaggactgcgttgccaatacattgttgcttgtgaaccaaaggggtca
cctgtaagtgaacgtgctgtccctgttgccatatttaccttatctaaaacggaacctgaa
agaatgaagttttatctgggaaagtggtgcaagcagcgccttagttcagaccataaagtt
gatattcgtttaattattgactggtcgtattacaagcagcgtcttagttcagctatccaa
aaagttatcaccattcccgctgcaatgcagaaggtggcaaatcccgtgcctagggtgctt
catcctgattggcttcataaaaaggtccgtgaaaaagatgataaatttcgccagagaaaa
ctagctgatatgttcagctcagcaaacaaagatggtgtgttggacaaaaatcattcggtg
gctcaagatgatgtgaacgatattgaggatttttgcaaagaaaacaagcctagcgtaaag
ggaccaaagccagttgcacgttcttatgaagttaataaagaacagtttggacgtgagcag
caagagagcaatgatccaaaatgcgatgacgatatctcatttgagaacattgacaagaac
gtggattaccaaggttggcttgaagtgagaaaaagaaaatggaaaggaattgtggagaag
aagaagaaacgaaggttgggtgatcaacgatctttaaagcagattgaatctcatgagata
aagaaaaaagtctcacaggttagaagaggtgtaggttcattctttaggaggcctgaagaa
gctttgactagctcacattggcagataatacagctggtcccaagtccacagagcggacaa
tttttcgcttgggtggttgtggaaggattgatgcttaaaatcccattgacaatcccaaga
gtgttttacattaattccaaagctcctatagatggaaaatttcccggaaagtgtgtcaac
aagattcttcctcatggaaagccttgttataatatgattgaggtagagattcaggaagaa
caatttagaaaagaaagcaagaagcttgcagctcttcttgcagaccctgaaattgagggc
atatatgaaacaaaggtgccgctggagtttagtgctatatgtcagattggatgtgtatgc
aaaattgataacacagccaagcgccgtaacacccaagatggatggaaagttggtgaactt
catatgaaaactacaactgaatgccgctacctggagcgatcaattccacttctttacttg
tatcacagcacctcaacactacgtgctatatatgttctatattgtcatgcatcgaagctt
atgtctgccgtggtagttaatccttatggcgacaaggaattattaccatctgccctggag
agacagtttagagatggttgccaagaattgtcactagagtcattgtcttgggatggtatc
gttttccaggtggactatgttgaccatgctgaagctgccgaaaagattatacaaaaagcg
ataagtgaatacagagaagaaaattctggaccaactgttgtagtcgttgaatgccctgac
tttaactccattaaggatggtataaaagccctggatgatttcccatgtgtgaggattccc
ttcaacggcgatgacaatagttatcagcctgtctcctggcaacgtccggcagcaaaatta
gcaatgttccgttgtgctgcagcatttcagtggttggatcggaggatttcccagtcaaga
tatgcccatgtgcctttggggaattttggactagattggttaacattcacagtagatatc
ttcctgtccagggcactccgtgaccagcagcaggtcctttgggtgtcagataatggtgtt
ccagaccttggtggtctgaacaatgaagaaacattctttgctgatgaggtgcaacagaca
agtttggtatatcctggagcgtatagaaaaatttctgtggagttaaagatccatcacttg
gctgttgatgcccttctgaaaagcaacctggtgagtgagatggaaggaggtgactttttg
ggatttgaacaggatgggaatcctagaggaagtagttcgaacgctaactccagttttgat
gagaccactggatgtgcccaagcatttcgagtcctgaaacaattgattcatagttgcttg
actgatgtgtgtaaatcacgcaatatatatgctgattccattttgcaacgtttgtcttgg
tggctctgcagcccttgctcgaagcttcatgatccagctcttcatctcatgcttcacaag
gtcatgcaaaaggtgtttgcgctgcttttgactgatttgcggagattaggtgcaacaata
atatttgcagacttctcaaagatcgttatcgacacagggaaatttgatctatctgctgct
aaggcgtattgtgacagcttgctcacagctgtggggaatagcgatatctttgagtggatc
tcgctcgagccggctcactactggcactcattactcttcatggaccagtataactacgct
ggtatccaagctaccgacgatgaaatttcacctgacgaagtgactattgaaccaaagtgg
agtgttgctcgacttttccctgagtatattcagagggatttcgtcataattgttgccaag
tttatatttgacccctggaaattctcattagagaagaaaagaggcagttcagagagttta
gaggcacagatggtagaatatctaaaggaacagataccatccagcttctttaatatgctt
gttgcaaaaatcaatgatatcgtgtcacacatgaaggagatggacgtttcagatgcatct
cgggattctcaagctcccaaaagagattacgcgttagagctcgtacaaactatctgtgct
gttatgggtcttgaccaaaatgtcgagcaagatgttcgggtaatgaaaaggaatctgttg
aagtacattaacgtaaaagaatttgccgctgaagccgaatttcttgatcctgggccttcc
tttatcttaccaaatgtggcttgcagcaactgtgatgcctacagagacctagatattggc
agagacccagctctattaacagagaaagaatggtgctgcgtagattcacaatgtgggaag
atatatgacagagagcagatggaaaatagtcttctccagatggtgagacagagagaaaga
atgtaccacatgcaggatctagtttgcattaggtgcaatcaggtgaaagcggctcatttg
acagagcagtgtgagtgttcaggatcctttagatgcaaggagagcgggtctgagttcctc
aagaggatggagattttcttggatatagcaaagcgccagaagtttaaactgttagaagaa
tgcacatcttggatcttagatcccaccggaagctggcaaaccaataccggacgacatcat
tcatag

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