Brassica oleracea (wild cabbage): 106295026
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Entry
106295026 CDS
T04124
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106295026
03036 Chromosome and associated proteins [BR:
boe03036
]
106295026
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
106295026
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106295026
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
106295026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
Mov-10_helical
Helicase_RecD
AAA_22
PhoH
DEAD
AAA_16
ATPase_2
AAA
SLFN-g3_helicase
Cep192_D4
Glyco_transf_7N
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
106295026
NCBI-ProteinID:
XP_013586238
UniProt:
A0A0D3C7U5
LinkDB
All DBs
Position
C5:complement(1892925..1896549)
Genome browser
AA seq
987 aa
AA seq
DB search
MSVSGYKSDDEYSVIADKGEIGFIDYQNDGVYNPLDEGPVVISAPFPFRNEKPQSITVGE
TSHDSFTIKNTTDEAVDLWTKIYASNPEDSFTLSVLKPPSKDSDAKEIQSFYETFTLEDR
MLEPGDALTVWVSCKPKDIGLHTTVISVDWGCDNVERVVFLLAEDKISSSLATNRPYSRN
RRAPRKDFAVDSYVTGSRPSKAVAQRPYKNRLPRYEIPKETREMLEKKEVPDFLNEGLTV
RNYAKYYKMLLIMEELQLEEDMRAYDMENVSMRRRGLYLSLEVPGLAEKRPSLVHGDFIF
VRHAYDDVTAQAYQGFVHRVEADEVHLKFASEFHLRHTSGSVYNVRFTYNRINTRRLYQA
ADAAEGLDPNFLFPSLKSGKRMIKTKPVVPISPALNAEQLCSVEMILGCEGAPPYVIHGP
PGTGKTMTVVEAIVQLYTTQKNARILVCAPSNSAADHILEKLLCLEGVRIKDIEIFRLNA
ATRSYEEIKPEIIRFCFFDELVFKCPPLQALNHYKLIVSTYMSASLLNAEGVKRGHFTHI
FLDEAGQASEPENMIALSNLCLSETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFE
CDYYCEGDENYVTKLVKNYRCHPEILDLPSELFYDGELVASKEDTDSVLATLKFLPNKEF
PMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVAEEDIGVITPYRQQVTKI
KEVLDRLEMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVA
ITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEREEFEEEAFIQEESSNA
PPLYSVEEAWNMSGEVNNDGTKEKNEWSDGWNDNGAGTKENNDWSDEWNNNGAGNKEKEE
CSDGWNNNCGTKEIEECSDVWNNNGGTKEKEECSDGNDGGGSKEKEEWSDGCNNNGSGTK
NADEWSDGWNENGGGTKNTDEWSDGWK
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgagtggatacaagtcagatgacgagtactccgtaatcgcagacaagggagag
atcggattcatagactaccaaaacgacggcgtatacaatccgttagacgaaggccccgtc
gtgatctctgcccctttccctttcagaaacgagaagcctcagtcaataaccgtcggagag
acttctcacgactccttcacaatcaagaacaccaccgacgaggccgtggatctctggacc
aagatctacgcctccaaccccgaggactccttcaccctctccgtcctcaaaccgccttcc
aaagactctgacgccaaggagatacagagcttctacgagaccttcaccctcgaagacagg
atgctcgagcctggcgacgcgctgactgtgtgggtgtcgtgcaagcccaaggatatcggt
ttgcacacgactgtgattagcgttgattggggatgtgacaacgtcgagcgtgttgttttc
cttttggctgaggataagatctcgagctcgctggcgactaacaggccttactcgaggaat
aggagggctccgaggaaggatttcgctgtggatagctacgtgacggggtctaggccttcg
aaggcggtggcgcagcgtccttataagaataggctccctcggtatgagattcccaaggag
actagagagatgcttgagaagaaggaggttcctgattttttgaacgaaggtctgacggtt
agaaactatgctaaatattacaaaatgttgcttattatggaagaactacaactcgaggaa
gacatgcgagcttatgatatggagaatgtttcgatgaggagaaggggtctgtatttgtct
ctcgaagtccctggccttgctgagaaaagaccttcccttgtccatggagactttatcttt
gtaagacatgcctatgatgatgtaactgctcaagcttatcagggctttgtacaccgcgtg
gaggcggatgaagtgcatttgaagtttgcttccgagttccaccttcgccacacatctggg
agtgtctataatgtgaggtttacttacaatcggatcaacactagaagattgtatcaggct
gctgatgcggcagaaggtttggatccaaacttccttttcccgtccttgaaatccgggaaa
aggatgataaagacgaaacccgtcgtgcccatttcgccagctcttaacgcagagcagctt
tgttccgttgaaatgattcttggatgcgaaggagcgccgccgtatgtgatccatggacct
cccggtactgggaaaaccatgacagtggtggaggcgatagttcaactctatacaactcag
aaaaatgctcggattctcgtctgtgctccttccaatagcgcggctgatcacattttagag
aagctgctttgtctggagggagttcgcatcaaggacattgagattttcaggctgaatgca
gctactcgttcctacgaagaaatcaaacctgagattatccggttttgcttctttgatgag
cttgttttcaagtgccctcctctccaagctttgaatcattacaaactcattgtttcaaca
tatatgagtgcatcccttcttaacgcagaaggtgtgaagcgtggtcacttcacccatatt
ttcttagacgaggctggtcaagcgtcagagccagaaaacatgattgctctctcaaatctc
tgcttgtcagaaactgtggttgtccttgctggagatccaaggcagttggggccggttata
tactcgagagatgcggagtcactcggcttggggaaatcgtacttggaaagattgtttgag
tgcgattattactgcgaaggggatgagaactatgtgacaaagctagtcaagaactacaga
tgccacccagagattcttgatctcccatcagagctgttctatgatggagaactcgtagcg
tccaaagaagacacagactctgttcttgcgacattaaaattccttccgaacaaagagttc
ccaatggttttctatgggatccaaggatgcgatgagagggaaggcaacaatccgtcatgg
ttcaaccgtatagagatcagtaaagttatagagacgatcaagagattgacagcgaacgac
tgtgtggcagaagaggatatcggagttataactccttacaggcagcaagtgacgaagatc
aaggaggttctcgataggttggagatgactgaagtcaaagtcggtagcgtcgagcaattc
caagggcaagagaaacaagttatcattatctcaactgtaagatctacaatcaaacacaac
gagtttgatagagcttattgtctgggcttcttgagcaatccaaggaggtttaatgtcgca
atcacccgtgcaatatctctgcttgtgatcatcggaaacccacatatcatttgcaaggac
atgaattggaacaagcttttgtggcgatgtgtggataacaatgcttaccaagggtgcggt
ttaccagagcgggaagagtttgaggaggaagcattcattcaagaagaaagcagcaatgct
cctcctctatactctgtagaagaagcgtggaacatgagcggcgaggtcaacaacgacggc
acaaaggagaaaaatgaatggtctgatggatggaacgacaatggtgctgggacgaaggaa
aataacgattggtctgatgagtggaacaacaatggtgctgggaataaagaaaaagaagaa
tgctctgatggttggaacaacaactgtggcacaaaggagatagaagaatgctctgatgtt
tggaacaacaatggtggcacaaaggaaaaagaagaatgctctgatggtaacgatggtggt
gggagtaaggaaaaagaagaatggtctgatggctgtaacaacaatggtagtgggactaag
aatgcagacgaatggtctgatggttggaacgaaaatggtggtgggactaagaatacagac
gagtggtctgatgggtggaagtaa
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