Brassica oleracea (wild cabbage): 106295050
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Entry
106295050 CDS
T04124
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106295050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106295050
03036 Chromosome and associated proteins [BR:
boe03036
]
106295050
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106295050
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106295050
PBAF complex
106295050
GBAF(ncBAF) complex
106295050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF7685
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
106295050
NCBI-ProteinID:
XP_013586277
UniProt:
A0A0D3CC66
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Position
C5:complement(11344212..11347985)
Genome browser
AA seq
771 aa
AA seq
DB search
MPASEDRRGKWKRRKRGGRRPKQEEEDMEEEHEDNNNEEMEDADNADELHQNGGATPDPG
PGVNEVVEDSGTRISDFPSVVRRVVIRPHASVTAVVAAERAGLIGESRGQGSLPSLENIS
YGQLQALSTVPADSVSLDTERSDGASSAYVISPPLIMEGEGVVKRFGDKVHVLPMHSAWF
APNTVDRLERQVVPQFFSGKSPHHTPESYMHFRNAIVSKYTDNPEKTLTISDCQGLVDGV
DDEDFARVFRFLDHWGIINYCATSQCHPEPSRDISDVREDSNGEVHVPSAALTSIESLIK
FDKPSCGHKSDSSVSCSDVDLPDLDIRIREHLCDNHCNHCSRPLPTVYFQSQKKEDVLLC
SDCFHHARFVAGHSCIDFVRVDTTKQYGDQDGENWSDQETLLLLEAVELYNENWVQIADH
VGSKSKAQCILHFLRLPVEDGLLDNVELPGVAYPANPTNGYDHKGTDSNGALPGSSEQES
ETEINLPFVKSPNPVMALVAFLASAVGPRVASSCAHESLMVLSADDRFKSEGKDPSLIDE
TTCQNGAEAPTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRME
LKLKQFAEIETLLMKECEQVEKTRQRFAAERARMVSARFGSPGQTSNTNNLQGMSLSTGG
GNNINTLLQQQQGSASSSQPSIIPGFSNNPQLHAQMQFMARQQQQQQAFSFGPRLPLNAI
QTNAGSTPSLFGNNQLNNNPAGSASINQPPFSHPMVRSSTGSGSGSGLGLN
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctgaagatagaagagggaaatggaaacggcggaagcgaggtgggaggaga
ccgaagcaagaggaggaagacatggaggaagaacacgaggacaacaacaacgaagagatg
gaggatgctgataatgccgatgagcttcaccaaaacggcggcgcaacgcccgatccggga
cccggtgttaacgaggtagtcgaagattccggtactcgcatctctgatttcccctcagtg
gtcaggcgcgtggtgatccggccacacgcctctgtaacggctgttgtggcggctgagaga
gctgggttgattggggagagtagagggcaaggctcgcttccatctctggagaacatttcg
tatgggcagttgcaggcattgtctactgtgccagctgattctgtgtcgcttgatactgag
aggagtgatggagcgtcttcggcttatgttatctctccacctcttattatggaaggagaa
ggagttgttaaacggtttggggataaggttcatgtcttgcctatgcattcagcttggttt
gcaccaaacacagtggatcggcttgagaggcaagtggtgccacagttcttctccggaaaa
tctccacatcatacaccagaaagttatatgcacttcaggaacgctattgtctcaaaatac
acggataaccctgaaaagacactgacgatatctgattgccaaggattggtagatggtgtc
gacgatgaagattttgcacgagtgttccgttttcttgatcactggggaataatcaattac
tgcgccacttcccagtgtcatcctgagccttctagggatatttcagatgttagggaggat
tcaaacggtgaagtccatgtgccatctgctgctttaacatctattgagagtttgatcaaa
tttgacaagcccagctgtggacacaagtcagattcatccgtgtcatgttcggatgttgac
ctccctgacttggacataagaattcgtgaacacctatgcgataaccattgcaaccattgt
tctcgaccgcttccaactgtgtacttccaatcacaaaagaaggaggatgtgcttttatgc
tctgattgttttcaccatgcaagatttgttgctggacattcttgtattgactttgtaagg
gtggatacgaccaaacagtacggcgatcaagatggagagaattggagtgatcaggaaact
ctattgcttctcgaagctgtggaactctacaatgaaaactgggttcagattgcggaccat
gttggttccaagtcaaaagctcaatgcattcttcattttcttcgattacctgtggaggat
ggtcttttggataacgttgagcttccaggtgtagcttacccggcaaaccctacaaatgga
tatgaccataaaggaacagattcaaatggggctttaccaggatcttctgagcaagaatct
gaaactgagatcaatcttcctttcgtgaagtctcctaatccggttatggcattggtagca
tttttggcatcagcagttggacctagagttgcttcgtcctgtgcccatgagtccctcatg
gttttatccgcggatgataggttcaaatctgaaggaaaagatcccagcttgattgatgaa
acaacatgccaaaacggagcggaagcaccgactcctctgccacaggacaaggttatggca
gcatttagagccggtctatcagctgcagcaaccaaagcaaagttgtttgctgatcatgag
gaacgtgaaatccaaaggctttctgcaaatatcgtaaatcatcagctgaagaggatggag
ctgaagctaaagcagtttgcagaaatcgaaacgttgttgatgaaagaatgcgaacaagtg
gagaaaacccgtcagagatttgctgcagaacgagcacgtatggtctcagcaagatttgga
tcacctggacagactagtaacactaataatctccaagggatgtctctatccactggtggt
ggtaacaacatcaatactctcctccaacagcaacaaggttcagcttcctcttctcaacca
agcatcatcccaggattcagcaacaacccacaacttcatgcgcagatgcagttcatggca
cgccagcaacaacaacagcaagcattctcctttggcccgagattgcctctcaatgctata
cagaccaatgcaggatcaacgccttcactgtttggcaacaaccaacttaataataaccct
gcaggttcagcatccatcaaccaacctccatttagtcacccgatggttaggtcttctact
ggttctggatccgggtctggcttagggttaaactaa
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