KEGG   Brassica oleracea (wild cabbage): 106295060
Entry
106295060         CDS       T04124                                 
Name
(RefSeq) LOW QUALITY PROTEIN: polynucleotide 3'-phosphatase ZDP
  KO
K08073  bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    106295060
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:boe01009]
    106295060
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:boe03400]
    106295060
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     106295060
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.32  polynucleotide 3'-phosphatase
     106295060
Protein phosphatases and associated proteins [BR:boe01009]
 HAD phosphatases
  Other HAD phosphatases
   106295060
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     106295060
SSDB
Motif
Pfam: zf-PARP PNK3P Hydrolase Hydrolase_6
Other DBs
NCBI-GeneID: 106295060
NCBI-ProteinID: XP_013586290
LinkDB
Position
C5:complement(39666767..39671217)
AA seq 669 aa
MVLTSFVSHHHHSPSLSINHTSNLLFRERGGKCLYHRNIFXRRKGEKKMPIVAEYAKSNR
SSCKACSKAIASKTLRVGLISKGPGGFDMTRWHHLECFPADSVSIDSVDDVKGLSALEKD
DQDALAKLVEQCGEPAKEVDEKEEEVTDPESDEIIGEKVKETKGSSASASVIAEYAKSSR
SSCKKCSQTIAAKELRLGMVTRDSRGFDMTKWHHLGCFPVESVPVDSVEEIGGFSSLQSD
DQDALKELVLQCGKETSKMEEDKDESVADKGLAEETNKRKHSQVEEEVEIKKAGSDEKSG
QKVKETKDSSASSKVIAEYAKSSRSSCKKCSQPIAAKELRLGMVTRDSRGFDMTKWHHLG
CFPVESVPVDSVEDIGGFSSLQNGDQDTLKELVQQCVNKTLKMDEDNDEIGTDYHQTEEA
NKRKHSQVGEMVVEDEVQTNENQPTTRKPKMNTSESTSQVVAEAEISFSASDVKEKYRDA
SLLPKWKAFETVIFLERDDGLNDSEKIATFDFDGCLAKTSVKKVGADAWSLMYPSIPEKL
QSLYSHGYKLVIFTNESNIDRWKNKRQAAVDSKIGRLNSFIKRVEVPIQVFIACGVASSG
GKDDLYRKPKPGMWQLMKKHFNSGIEIDMDKSFYVGDAAGRKGDHSDADIKFAQANGLKF
FTPEEYFIA
NT seq 2010 nt   +upstreamnt  +downstreamnt
atggttctaacctccttcgtctctcatcaccatcactctccctctctttcgattaaccac
acttccaatctccttttccgagaacgaggaggaaagtgtctctaccatcgtaacattttt
nggagaagaaaaggcgaaaagaagatgccaatcgtagccgagtacgcgaagtcgaaccgg
tcttcgtgcaaagcgtgttcgaaggcgatcgcctcgaaaaccctaagggtggggctgatt
agcaagggacccggcggattcgacatgaccaggtggcaccatcttgagtgtttccctgcc
gattcggtgtcgattgattccgtcgatgatgtcaaaggcttatccgctttagagaaagat
gatcaggatgctttggcgaaactggtggaacagtgtggtgagcctgctaaagaagttgat
gagaaggaagaagaggttacagatcctgaatcagatgaaattattggggagaaggttaag
gagacgaaaggttcttctgcttctgcgagcgttattgctgagtatgctaaatcaagcaga
tcgtcttgcaagaagtgttctcagacgattgctgctaaagaactgagattagggatggtg
accagagactctcggggatttgatatgactaaatggcatcacttgggatgtttccctgtt
gaatcagttccagttgattctgtagaggagattggtggattttcatcactgcagagcgat
gaccaggatgcactaaaggaattggtcctacaatgcgggaaggagacttcgaagatggaa
gaagataaagatgaatctgtagctgataaagggctagcggaggagacaaacaaaagaaaa
cattctcaggttgaggaagaggtagagattaaaaaggccggatcagatgaaaaaagtggg
cagaaagttaaggagacgaaagattcctctgcatcttcaaaagttattgctgagtacgcc
aaatcaagcagatcatcatgcaagaagtgctctcagccgattgctgcaaaggaactgaga
ttggggatggtgaccagagactctaggggatttgatatgactaaatggcatcacttggga
tgtttccccgttgaatcagttccagttgattccgtagaggacattggtggattttcatca
ctgcagaatggtgatcaagatacactaaaggagctggtccaacaatgcgtgaacaagacc
ttgaagatggacgaagataatgatgagattggaactgattaccaccaaacggaggaggca
aacaaaagaaaacattctcaggttggggagatggtggttgaagatgaagtgcaaaccaat
gagaaccaaccgactactagaaaacctaagatgaacaccagtgagtcaacttctcaggtc
gtagctgaagcagaaatctccttttcagcttctgatgtgaaggaaaagtacagggatgcc
agtctattacccaagtggaaagcgtttgagactgtaatattccttgagcgggatgatggc
cttaatgattcagagaagatagctacatttgattttgatggatgccttgcaaaaacatcg
gtgaaaaaagtaggtgcagatgcatggtcacttatgtatccttctattcctgagaaactg
caaagtctttatagtcatggctataagctggtgattttcacaaatgagtctaacattgac
cggtggaaaaacaaaagacaagctgctgtggactcgaagattggacgcctcaacagtttt
atcaagcgtgtagaggtccccattcaggtgtttatagcctgcggagtcgcaagttctggt
ggtaaagatgacctttaccgcaaacccaagcctggaatgtggcaactcatgaagaagcac
tttaactctggaatcgaaattgatatggataaatcgttctatgttggggatgcagccgga
agaaaaggcgatcacagcgacgcagacattaaatttgcgcaggcgaatggattgaagttt
tttactccagaggagtactttatcgcttga

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