KEGG   Brassica oleracea (wild cabbage): 106295190
Entry
106295190         CDS       T04124                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe04142  Lysosome biogenesis
boe04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:boe00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    106295190
   04148 Efferocytosis
    106295190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:boe04131]
    106295190
Membrane trafficking [BR:boe04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    106295190
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz VPS18_solenoid_2nd WD40 Beta-prop_WDR5 zf_RING_Vps8 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_EML_2 WDR55 zf_RING_Vps8_fungal Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_HPS5 Beta-prop_VPS8 PEP5_VPS11_N Beta-prop_WDR36-Utp21_1st zf-RING_2 FAR1_N CBP1_N EIF3I TPR_YpiA Beta-prop_WDR90_POC16_2nd Beta-prop_WDR11_2nd WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 106295190
NCBI-ProteinID: XP_013586479
UniProt: A0A0D3C8G4
LinkDB
Position
C5:3118181..3124107
AA seq 971 aa
MASLPSENGVDGDDEREEEEEDEEEEEEEENGEEEGEEEPRLKYQRMGGNVPSLLSNDAA
SCIAVAARMIALGTHDGTVHILDFLGNQVKEFRAHTAPVNDLSFDSEGEYIGSCSDDGSV
VINSLFTDDEKMRFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGYKDQV
LHSGEGPIHSVKWRGSLIAWANDTGVKVYDTAKDQRVTFIERPRGSPRPEALLPHLVWQD
DTLLVIGWGTSVKIASIKSDQQKPAYGTYRQVQMSSLNQVDIVASFQTSYFISGIAPFGD
SLVILAYIPTEEDGMKEISSTTTLSRQGNAQRPEVRIVSWNSDELTMDALPVHGFEHYKA
KDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEKA
LAAVEAGEGRNELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLR
QLPVLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSTVKSWPRSVYSALPVISAIE
PQLNTSSMTDALKEALAELYVIDGQHEKAFALYADLLKPEVFDFIEKYNLHEAIRGKVVQ
LMLLDCKRATALFIQNRDLIAPSEVVPQLLKAGKKCDSRYYLYLYLHALFQVSPDGGKDY
HDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDLLREQVFVLGRMGNAKQALAV
IINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVPN
GLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSNEEDDS
RGKREDNNRSISQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCHA
YHMTCLMDAAFSDSNNKTAKGSSGYGYGYDNGVEEEDTEDEEEDDSNDGDRSGRSRLRCI
LCTTAAAASAR
NT seq 2916 nt   +upstreamnt  +downstreamnt
atggcttcgcttccgtctgaaaacggcgttgacggagatgacgaaagggaggaggaggag
gaagatgaagaagaagaagaggaggaagagaacggagaagaagagggcgaggaggagcct
cgcctcaaataccagcggatgggaggcaacgtaccttctttgctctccaacgacgctgct
tcctgcatcgccgttgccgcgaggatgatcgctctcggtactcacgacggaacggtccac
atcctcgatttcctcgggaatcaggttaaagagtttcgtgcccacacggccccggttaat
gacctaagctttgacagtgagggagagtatatcggaagctgttcagacgatggctctgtt
gttataaacagccttttcactgatgatgagaagatgaggtttgattatcatcgccccatg
aaggctatttccttggatccggattacaccaagaagcagtcgaagagatttgtagctggt
ggcttggctggtcacttgtatatgaactcgaagaagtggtttggttataaagatcaggtg
ctgcattctggggaaggtccaatccattctgtgaaatggagaggaagtctcattgcgtgg
gctaatgatactggtgttaaagtttatgatacagccaaagatcagcgtgttacttttatt
gaaagaccccgaggaagcccccggcctgaggctttgcttccccacttggtttggcaggat
gacactcttcttgtgattggttggggaacatctgtcaaaattgcttcaattaaatcagac
cagcaaaaaccagcatatggaacatataggcaggttcagatgtctagtctaaaccaagtg
gacattgtggcgtcgttccaaactagctatttcatttcagggattgctccctttggtgat
tctctagttattcttgcatatatacccactgaagaggatggcatgaaagaaattagcagc
accactactctatctcgtcagggaaatgcccagaggcctgaagtacgcattgtatcatgg
aacagtgatgaacttacaatggatgctcttccggtacatggctttgagcattacaaggcg
aaagactattcccttgctcatgctcctttcccaggtagtagctatgctgggggacagtgg
gcggctggtgatgaaccactgtactatatcgtgtctccaaaggatgttgtgattgcaaaa
cccagggacgctgaagatcacattaactggcttttgcaacatggattccacgagaaagca
ctagcagctgtcgaggctggtgaaggacgaaacgaactaattgataaggtgggtgctggg
tatcttgatcatttgattgtggaaagaaaatatgctgaagcagcatctttgtgcccaaaa
ttgttacgaggatctgcttcagcctgggagaggtgggttttccattttgctcaactacgc
cagctgcctgtccttgttccctatatgcctaccgataacccaaggctcaaggatactgtg
tatgaggttgctctagtggcactggcaacaaacccctcataccataaagagcttttgtcc
accgttaaatcttggccacgttcagtatattctgctttgcctgttatctcagcaatagag
cctcagttgaacacatcttcaatgactgatgccctcaaagaggcgctggcagagctgtat
gtgattgatggacagcacgagaaagccttcgccctatatgctgatcttctcaaaccagaa
gtgttcgacttcattgagaaatacaacttgcatgaggcgattcgtggaaaggttgtccag
ttaatgctgcttgattgcaagcgtgccactgccttgtttatccaaaacagggatttgatt
gctccatcggaagtggtcccacaacttttgaaagctggcaagaaatgtgattcaagatat
tacttgtacttatatctgcatgcgttatttcaagtcagtccagatggtgggaaggattat
catgatatgcaggtagaactatatgcggaatacgatacaaagatgctgcttccattccta
cgtagcagtcaacattacaagttagaaaaggcatatgaactttgtgtcaagaaagatctg
ctaagagagcaagtttttgtcctgggaaggatgggaaatgcaaaacaagctcttgctgtc
atcattaataaactgggggatatagaagaggctgtggaatttgtgtccatgcagcacgac
gatgatctctgggaagaactgataaaacaatgtctgaacaagcccgagatggtgggcttg
ctgttggagcacacggttggcaaccttgaccctctttacatagttaatatggtcccaaat
ggcttggaaatacctcgattaagggatcgattggtcaaaatcgtgacagattacagaacc
gagacatctctaagacacggttgtaatgacattctcaagacggacattgtgaatcttctg
gtcaagtgcttcaacgaggcgagacgtggggtctgccttagcaacgaagaagacgattcc
cgtggaaagagagaagacaacaatcgatcaatctcacagagaatggtagtagataaatca
ttgagcattaagatgacagaggtgaagtcgaagacacgaggggacacacgttgttgcatg
tgcttcgacccggtgtcgataagaggggacaccgtggtggtcttcttttgctgtcatgct
taccacatgacgtgtctcatggatgctgccttcagcgacagcaacaataagacagccaaa
ggttcttcgggatatggatacggctacgataatggtgtggaggaggaagatactgaggat
gaggaagaagatgatagtaatgatggagacaggtccgggaggtcgcggttacggtgcata
ttatgtactactgccgctgctgcgtccgctcggtag

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