Brassica oleracea (wild cabbage): 106295213
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Entry
106295213 CDS
T04124
Name
(RefSeq) uncharacterized protein LOC106295213 isoform X1
KO
K06100
symplekin
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106295213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106295213
03019 Messenger RNA biogenesis [BR:
boe03019
]
106295213
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106295213
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106295213
U7-dependent histone pre-mRNA processing factors
106295213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
106295213
NCBI-ProteinID:
XP_013586506
LinkDB
All DBs
Position
C5:17296373..17307784
Genome browser
AA seq
1314 aa
AA seq
DB search
MATAARAQALSLLAAANNHGDLAVKLSSLRQVKELLLSLEPSLSAEIFPYLAELHSSPET
LVRKSLVEIIEEVGLRMLDHSYVLLTVLLVLAKDEDPVVAKNAISVGTAFYCTILEEMAM
QFHHRGKVYRWVGELWTWMVKFKDAVFSTALEPGCVGVKVLALKFMETFILLFTPDASDP
EKIFNEGSRKMFNISWLVGGHPILNSAMLMSEANRTFGILLDLIHSAGRLPGALTITVVS
CLAVVARKRPVHYNSFLSVLLDFHPNLESVKGCHAASVQYSIRTALLGFLRCTSSPMIES
RDKLLRALRAMNAADVADQVLRQVDKLIRNNERAARENWSGKNNQAINHQNSWDLSKKRI
MPQGEDDTVNGEVAPKRLRHNNNMHLTPKGQISDSPHGTVSINGISSGNHPSDSEPTPVE
QMVSMIGALLAEGDRGASSLEILISKLHPDMLADIVITSMKHLPSNPPTLTTSLATPADI
VVSSSINPMRSPTRQPQLPFDSTLPFGSSLSDVPSLNAVVDPRRDPRRDPRRMDPRRSNP
SVGPTSLPGDEGKETVPVQMDISTVASKPPSVPDVTAGTGGSVHPTTVDHSQNKVMGSSI
IRRIDQPDCREDLLPIPKEYGYLSKGKSPLDVPLSPCRDDEGIRNTKLDLDLVSVPDFNQ
HSPSEAGPDFELHPPVDSNITAAEESYRELAPVPSYVELTTEQSNTVGKLALQRIIESNR
HVCGFDCNKIRMALIARLIAQIDAGNDVAAILRAHISVDHREFKGHELVLHVLYHLDSMA
NLDTDESSSYATVYENFLIAVARSFLDTLPPFDKSFSRLFGEAPHLPDSAIKLLNELCST
RPDPVGGEACDSERVTQGLGVVWSLILVRPNERKACLAIALNCSVHYEEDIRAKAIRLVT
NKLYHLTYISEHVEQFATDRLLTAVNSETDFSQTAEGTNIEAKSQITSTSDSPRSGNSDI
HSQQDLQTSRDVSVLSFSEAQRLISLFFALCKKKPSLLRLVFEVYGKAPKTVIQAFHRHM
PILIRELGSSYIELLPIISDPPKGSENLLTLVLQILTQELAPSLDLIATVKHLYETKLKD
VSILIPLLSSLTKDEVLPIFPPLLNLPPDKFQLALAHILQGSAHTGPALTPAEVLIAIHE
VVPDKDGPTLKKITDACSACFEQRTVFTQQVLAKALGQMVDRTPLPLLFMRTVIQAIDAF
PTLVDFVMGILSKLVSRQIWRLPKLWPGFLKCVSQTQPHSFPVLLELPMPQLESIMKKFP
DLRPSLTAYANQPTIRASLPNSALSVLGLDSGQDSRPQMHPSDAASSVHGAALT
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgccgccagggcgcaggcgctctctctcctcgccgcagccaacaaccacggc
gatttagcggtgaagctctcgtctctaagacaggtgaaggagttattgctgtcccttgag
ccgtctctctccgctgagattttcccctatctcgcagaactccactcgtcgcctgaaact
ctagttcgcaaatcccttgttgagatcattgaagaggttggtttgaggatgcttgatcat
tcttatgttctactgactgtattactagtcttagccaaggacgaggacccggttgttgca
aagaatgctatttctgttggaacagctttctattgcaccatcttggaagagatggcaatg
cagtttcatcatcgtggtaaagtttatcgttgggttggggaactatggacatggatggtt
aagttcaaagacgccgtcttttctactgctttggagcctggttgtgtgggggtgaaagtt
ttggcgctaaagtttatggagacatttattttgctttttactcctgatgcatctgatcct
gagaaaattttcaacgaaggaagtagaaaaatgtttaacatttcctggcttgttggcggt
caccccattctaaattcggcaatgctcatgtctgaagcaaataggacatttggcatctta
ctagatctcatacattcggctggtcgtttaccgggtgcactgacgataactgttgttagt
tgtcttgcggtggtagcaaggaagaggcctgtccactacaacagtttcctttccgttcta
ctggattttcacccaaatcttgagtcggtaaaggggtgccatgctgcaagcgtgcagtat
tccataagaactgccttactgggattccttagatgtacttcctcacctatgatagagtca
agagacaagcttcttagagcattacgagcaatgaatgctgcagacgttgctgatcaagtt
ctccgccaagttgataaattgatccgaaataatgagcgcgctgcacgtgagaattggtca
ggcaagaacaaccaggcgataaatcatcagaattcttgggatttgtcaaagaaacgaata
atgccccagggtgaagatgatacagtcaatggagaggttgctccgaagcgcttacgccat
aataataacatgcatttgactccgaaaggtcaaataagtgattctccacatggaactgtc
tctatcaatggcatatcctctggtaaccatccttcggacagtgagccgactccagtggaa
caaatggtttcaatgatcggtgctctacttgctgaaggagacagaggagcttcttcactt
gaaattctcatttctaagcttcatccagatatgcttgctgatattgttattacaagcatg
aagcatttgcctagtaaccctcctacgttgacaacttctctagctactccagcagatatt
gtcgtttcttcttccataaatcccatgcgttctccgactcgtcagccacaacttcctttc
gattcaacccttccctttgggtcatcattatccgatgtgcctagcttgaacgcggttgtc
gaccctagacgcgacccaagaagggaccctcgtcgcatggatccaagacgttcaaatcca
tctgtgggaccaacatcactgcctggagatgagggtaaagaaacagtcccagttcagatg
gacatctcgaccgtagcgagcaagccaccttcggttcctgatgtcacagcagggactggt
ggttcagtacatccaacaacagtagatcatagccaaaacaaggtgatgggaagttcgata
atcagaagaatcgatcagcctgattgcagagaggacttgttgcctattcccaaggagtat
ggttatctctcaaagggcaaatcacctttagatgttccactgtctccttgcagggatgat
gaaggcatcagaaatacaaagcttgatttggatctagtgtctgttccagattttaatcaa
cactcgccttcagaagcagggccagattttgaactacacccccctgtagactcaaatatt
actgcagcagaggaaagctaccgagagttggcacctgttccatcatatgttgaacttacc
acagagcaaagcaacactgtaggaaagttggctttacaaaggataattgaatcaaataga
catgtctgtggctttgattgtaacaagattcgcatggcactgattgcccgattgattgct
cagattgatgctggcaatgatgttgcagccatactaagagcgcatattagtgtggatcat
cgagaattcaaggggcatgaacttgttttacatgttctttaccatctggattcgatggcg
aatctggacactgatgaatcctcttcctatgctactgtttatgaaaattttctcatagca
gtggcaagatcatttctggatactctccctcctttcgacaagtcttttagcagacttttt
ggagaagctccacatctacctgattctgccataaagctactgaatgaactctgctccact
cgtcctgacccagttggaggagaagcctgtgatagtgaacgtgttacccaagggcttggt
gtagtttggagcttaattctagtgcgtccaaatgagcgaaaagcatgcttagctatagca
ctgaattgttcagttcattatgaagaagacatccgtgcaaaggccatccgacttgtcaca
aacaaactatatcaccttacatacatatcagagcatgttgagcaatttgcaacagatagg
ctactgactgctgtgaactctgagacagatttctcgcagactgcagaaggaacaaatata
gaggctaaaagtcagataacttcgacaagtgactctccaaggtctggaaactctgacatt
cactctcagcaggatctacaaacttctcgtgatgtttctgttttatcattttctgaagct
cagagactaatttctctgttcttcgctttatgtaaaaagaaacctagtctccttcgactt
gtctttgaagtttacgggaaagctccaaaaacagtaatccaggcttttcatcgacatatg
cctattctgatacgagaattaggatcatcttatattgaactgctccctataatatctgat
cctcctaagggaagtgaaaatttattgacattggtgttacaaatattgacacaagaattg
gcaccgtcgttggatttgattgctactgtaaagcatttatatgaaacgaagctaaaggat
gtttcaattcttatcccattgctttcttcactcactaaagacgaggttttacctatcttt
ccgccgcttcttaatcttccacctgataagttccaacttgcacttgctcatatattacag
ggttctgctcacactggccctgccctaacacctgccgaggtactgattgctattcacgag
gttgttcctgataaagatgggccaacactgaaaaagataacagatgcatgttcagcttgc
tttgaacaacgcacagttttcacgcagcaagtcttagcaaaggccctcggtcagatggtt
gatcgaacacctctgcctttactcttcatgagaacagtaattcaggcaatcgatgctttt
ccaacacttgttgactttgtcatgggaatcctttccaagttggtgagtaggcagatatgg
agactaccaaaactgtggcctggcttcttgaaatgtgtgtctcagacacagccacattct
ttccctgtcttgttggagttgccaatgccacaacttgaaagtataatgaagaagtttcct
gatctaagaccttctcttactgcttatgcgaatcagccaactatcagagcttctctacca
aattcagctctttcagttcttgggcttgacagtgggcaagattcgcggccacaaatgcac
ccttcagatgcagcttcttctgttcatggggcagccttaacgtga
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