Brassica oleracea (wild cabbage): 106295269
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Entry
106295269 CDS
T04124
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
boe03009
]
106295269
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
Other 90S particles
106295269
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
OB_PDCD11
Spt6_S1
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
PRP6_TPR
DUF8501
NRDE-2
UTP6_C
ARM_TT21_N
EDC3_N
Motif
Other DBs
NCBI-GeneID:
106295269
NCBI-ProteinID:
XP_013586580
UniProt:
A0A0D3CL10
LinkDB
All DBs
Position
C5:41927031..41939120
Genome browser
AA seq
1924 aa
AA seq
DB search
MVAPSKKVASGKRNDSTKVFKSSKKPFKKTKDDVAARSEAMALQLEDVPDFPRGGGTSLS
KTERKKIYEEVDAEFEAEERVSKRSKGGKPKMKRNPSEVDELGSLFDGGLTGKRPRYANK
ITIKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEALDFTDFGTEDDENELLRDI
FSVGQLVPCFVLQLDDDKKEAGKRKIWLSLRLSLLHKGFSLDSFQSGMVVTASVKSVEDH
GYILHFGLPSITGFIKKSKDGNQELKTGQLIQGVVTNIDKERKIVSLSADPDSVAKCVTK
DLSGMSFDLLIPGMMVNARVQSVLENGILLGFLMYFTGTVDLFHLQNPMCNKSWKDEYTQ
TKMVNARILFMDPSTRAVGLTLNPHLVGNKVPPLHVSSGDIFDEAKVVRVDKSGLLLELP
SKPVSTPAYVSTYDAAEDEVKKLEKNFKEGNRIRVRILGLKHMEGLAIGTLKESAFEGPA
FSHSDVKPGMVTKAKIISVDTFGAIVQFPGGLKAMCPLQHMSEFEVTKPRKKFKVGAELI
FRVLGCKSKRITVTCKKTLVKSKLPILSSYADATEGLVTHGWITKIEKHGCFVRFYNGVQ
GFVARFELGLEPGSDPSSVFHVGEVVKCRVTSAVHGTRRINLSFMIKPTSVSEDDSIKLG
SIVSGVIDSITPQAVTVHVKSKGLLKGTVSAEHLADHHDQAKLMISLLRPGFELDKLLII
DIDGNNLALSSKYSLIKLTEELPSDISQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAP
RSKAIDDPRADLSESFFVGQSVRANIVDINQEKSRITLSLKQSSCASVDASFIQEYFLTD
EKISDLQSSDNTESECSWVEKFSIGSLVKGTVHEQNDLGLVVNFDNIDNVLGFIPQYHLG
GATLEHGSVVEAVVLDISRAERLVDLSLRPELINNSTKEVSNNQSKKKRRRGISKELEVH
QRVSAVVEIVKEQYLILSIPEHGYTIGYASISDYNTQKLPVKQFSAGQSVVASVESLQNS
LTSGRLLLLLDSVSGISDTPHSKRTRNKSSCGVGSVVHAEITEIKPLEVRVNFGQSFRGR
IHITEVDDVSTSEEPFSKFRVGQSVSARVIAKPWHTNIKKSLWELSSKPAILRDSSELNG
IQVREQLEFVNGERVRGYVYKVDKEWVWLTISRNVTAGVFILDTACDAQELEEFERRFPI
GKAVSGYVLTYNKEKKTAQLVQRPLLDIQKSIANGGGCKTDNLDNSIPGDDATLFIHEGD
ILGGRISKILPGVGGLRVQIGPNVFGRVHFTEINDSWVSNPLDGFHEGQFVKCKVLEISN
SSKGTLQIELSLRTSLDGMTSDQLSEASNNNVNICKRFERIEDLSPDMAIQGYVKNTMSK
GCFIMLSRKLDAKVLLSNLSDTFVKDPEKEFPVGKLVTGRVLNVESLSKRVEVTLKKGNA
GGQPKSESYDLKQFHVGDVISGSIKRVEPYGLFITIDKTSMVGLCHKSQLSDDRIEDVQA
RYEAGESVTAKILKLDEEKQRISLGMKSSYFMNDDDVKAQPPSEENAKEDSMECDPINDL
KSGVLAAVGNFGFQETGSERQSGTSLVLAQVESRASIPALEVNLDDIEEAGFDNDQNEKL
QGVDKDEKSKRREKQKDKEERERKIQAAEGRLLENHAPESADEFEKLVRSSPNSSFVWIK
YMAFMLSLADIEKARSIAERALRTINIREEDEKLNIWVAYFNLENEHGSPPEEAVKKVFE
RARQYCDPKKVYHALLGVYERTEQYKLADKLLDEMVKKFKQSCKVWLRKVQSHLKQDVED
IQSIVNRALLCLPRHKHIKFISQTAILEFKCGNADRGRSLFEGVLREYPKRTDLWSVYLD
QEIRLGEVDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSAGDEERVEYVKQRAMEYAD
STLA
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atggtggctccgtcgaaaaaagttgcaagtggaaaacgtaatgactctactaaagtattc
aagtcatcgaagaaaccgttcaagaagacgaaggacgatgtcgctgcaaggtctgaagcc
atggctctccagctcgaagacgttcctgactttcctcgagggggaggcacttctctgagc
aaaacagagcgtaagaaaatatatgaagaggtcgacgctgagtttgaagctgaggagcgt
gtttccaagaggagtaaaggaggtaaacctaagatgaagagaaaccctagcgaggttgac
gaattaggatctctttttgacggtggtttaactggaaaacggccaagatatgccaataag
attaccattaagaatatctctccgggaatgaagcttcttggagttgttactgaagtaaac
cagaaggacatagtaattagtcttccagggggattacgtggactggttcgcgcaagcgag
gccttggattttacggatttcggaacagaggacgatgaaaatgaactccttcgagacatc
ttttcggtgggccagcttgttccttgctttgtattgcagttagatgatgataagaaggag
gcgggcaaaaggaaaatatggctttcgttgcgactttctttgttgcacaagggattcagt
ttggattcctttcagtcgggaatggtagtcactgcaagcgtgaaaagcgtggaagatcat
ggttatatccttcactttggattgccttctatcacaggatttatcaaaaaaagcaaagat
ggaaatcaagagttaaagactgggcaacttattcagggcgtggttacaaatattgataaa
gaacggaaaattgtttctcttagtgcggacccagattcagtggcgaagtgtgtgaccaag
gatcttagtggtatgtcgtttgatcttctcataccaggcatgatggttaatgcccgtgtg
caatctgtacttgagaatgggatactgttaggatttcttatgtactttactggaacggtt
gatctattccatttacaaaatccaatgtgtaacaagagctggaaggatgaatatactcag
actaagatggtcaatgctagaatattgtttatggatccatcaactagagctgttggtttg
acgttaaacccacatcttgttggtaacaaggttcctcctttgcatgtctctagcggagac
atatttgatgaagcaaaagttgtccgtgttgataaatcaggccttcttcttgaactccct
tctaagcctgtttcaactccagcatatgttagcacttatgacgcagcagaagatgaagta
aagaaactggaaaagaatttcaaggaaggaaaccgcatccgtgttcgaatcctcggcctt
aagcatatggaggggttggcgatagggactttaaaggaaagtgcttttgaagggccagct
ttctcccactcagatgtcaagcctggtatggtgacgaaggcaaaaatcatatctgttgat
acatttggtgccattgtgcaatttccgggtggtttgaaagcaatgtgcccacttcagcat
atgtctgagtttgaagttacgaagcccaggaaaaagttcaaggttggagctgaactaata
tttcgggtgcttggctgcaaatcaaagagaataactgttacatgcaagaaaacacttgtc
aagtctaaacttccgattttgagttcttacgctgatgcaactgaaggattagtgacacat
ggctggataacaaagattgaaaagcatggatgctttgttcgcttctataatggggtgcaa
ggatttgttgccagatttgaacttggattagagcctggtagtgatcccagttcagtgttt
catgtcggggaggttgtcaaatgcagagtaaccagtgctgttcatggtactcgaaggatc
aacctcagctttatgataaaaccaacaagtgtttctgaagacgattccatcaagttaggt
agtattgtatctggggtaattgatagtataactcctcaggcagtcactgtccatgttaaa
tccaaaggtttgctgaagggtacagtttctgctgaacatttagctgatcatcatgaccaa
gcaaaactaatgatatcccttctaagacctggatttgagcttgataagctgctgataata
gacattgacggcaataacttggctctctcttcaaaatattctctgattaagcttactgaa
gagcttccttcggatattagtcagctccagccaaactcagtggttcatggttatgtttgt
aacttgattgaaaatggctgctttgtccgttttctgggtcggttgactggtttcgcccct
agaagcaaggcaattgacgatcccagggcagatctgtctgaatccttctttgttggacaa
tcggttcgggctaatatagttgatatcaatcaagaaaaaagcaggataactctttcattg
aaacagtcatcttgtgcttctgtagatgcttcttttatccaggagtacttccttacggat
gagaagatctcggacctgcagtcatctgataatactgaaagtgaatgtagttgggttgag
aaattctctattgggagtttggtcaagggaaccgtacatgagcaaaatgaccttggtttg
gtggtgaattttgacaatattgataacgtgcttggttttatacctcagtatcatttgggc
ggagctactttggaacacggttctgttgtcgaagcagttgttcttgatatatctagggca
gagagactagttgatttgtctttgcggcctgagctcataaacaactcaaccaaagaggtg
tccaacaaccagtccaaaaagaaacgtagaagaggtatttccaaggaacttgaagtccac
caaagggtcagcgctgttgtagagattgtgaaggagcaatacctgattttgtcgattcca
gaacatggttacactataggatatgcgtcaatatcagactataacacacagaagttacca
gtgaaacaattttcagctggacaaagtgttgttgcgtctgtggagtctctgcaaaactct
ttgacgtcggggaggttgcttctacttcttgactctgtttcgggtatttctgatacaccc
cattcgaagaggacaaggaataaatccagttgtggggttggttctgttgtccacgccgag
attactgaaataaagcctttggaagtaagagtaaactttggccaaagtttccgaggaaga
atccacataacggaggtggatgatgtaagtacaagtgaagaacctttttccaaattcaga
gtcgggcaatcagtgtctgcaagggttattgcaaagccctggcatactaatatcaaaaag
agtctttgggagctttcttcaaagcccgcaatacttagagactccagtgaattgaatggc
attcaagtgagggaacaacttgagtttgttaatggagagcgtgtcaggggatacgtctac
aaagtggataaagaatgggtttggctgacaatatctcgcaatgtgacggccggcgtattc
attttagacactgcatgcgacgctcaagaacttgaggagttcgagaggcgttttcccatc
ggtaaagctgtttcaggctatgttttgacgtacaataaagagaagaaaacagcacagttg
gttcagcgtccactacttgatatccagaaaagcattgccaacggtggaggctgtaaaacg
gataatctagacaatagtattcctggtgatgatgctactctattcattcatgaaggagac
attcttggtggaagaatttctaagatacttcctggtgttggtggacttcgtgtgcaaata
ggtcctaacgtgtttgggagagttcattttactgaaatcaatgattcatgggtctccaat
ccattagatggttttcatgaaggtcagtttgtcaagtgcaaggtcttggaaatcagcaat
tctagtaaagggactttgcaaattgaattgtcgttacggacatctctagatggtatgact
tctgaccaactctcagaagcttcaaataataatgtcaatatatgcaaacgttttgaaagg
attgaagatctttctcctgatatggccatccagggttatgtcaagaatacgatgtcaaaa
ggttgttttattatgctttcaaggaaactcgacgcgaaagttctattgtcaaatttaagt
gatacttttgtcaaggatcccgaaaaggagtttccagtagggaaacttgtaactggcagg
gtgttaaatgtcgagtcgttatccaagcgggtagaagtcactctgaagaaaggaaatgcg
ggtgggcaaccaaaatctgaatcttatgatttgaagcaattccatgttggagacgtgata
tcagggagcatcaaacgagtggagccctatggcttattcattacaatagacaaaacgagc
atggttggattatgtcataaatcacagctttctgatgatcgtatcgaggatgtacaagcc
agatatgaggctggggaaagtgtcaccgcaaagattttgaagttggacgaggaaaagcaa
cgtatatcgcttgggatgaagagttcttattttatgaacgacgatgatgtcaaggcacag
ccaccttctgaagaaaacgctaaggaagacagcatggaatgtgatccaatcaatgatttg
aagtcgggagttcttgcagcagttggtaatttcgggttccaggaaacaggttctgaaaga
cagagtggaacttctctggttcttgcccaagttgaatcaagggcttctatccctgcgctt
gaggttaaccttgacgacattgaggaagcgggatttgacaatgatcagaatgagaagcta
cagggagtcgataaagatgaaaagagcaagagaagggaaaagcagaaagacaaagaagaa
agagagagaaaaatacaagctgctgaaggaagattgctggagaatcatgctcctgagagt
gctgatgaattcgagaaattggttagaagctctccaaatagcagctttgtctggattaag
tatatggcgttcatgctcagtttggctgatattgagaaagccaggtccatcgctgagagg
gccttgaggactataaatattcgtgaagaagatgagaagctaaacatatgggttgcttac
ttcaatttggaaaatgaacatggaagtcctccagaggaagctgttaagaaagtttttgaa
agagcacgtcaatactgtgacccaaagaaagtttaccacgctctcttgggcgtatacgag
agaacagagcaatataaattggctgataagctgcttgatgagatggtcaagaagttcaag
caatcttgcaaggtttggttaagaaaagtacaaagtcatctgaagcaagacgtggaagac
attcagtccatcgtgaatcgtgccttgctatgtcttccgcgccataagcacattaaattc
atatcacagacagctattcttgagttcaaatgcggaaatgcagacagagggagatcactt
tttgaaggcgttcttagggaatacccaaagagaacagacttgtggagtgtttatcttgac
caggagattcggttgggagaagttgatgtgattagatctttgttcgagagagccattagc
ttgagtttgcctcctaagaagatgaagtttttattcaagaagttcttggaatatgagaaa
tctgctggtgacgaggagagagtcgagtacgtgaagcaaagggcaatggagtatgcagac
agtaccttggcctga
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integrated database retrieval system
