Brassica oleracea (wild cabbage): 106295374
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Entry
106295374 CDS
T04124
Name
(RefSeq) protein HUA ENHANCER 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106295374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106295374
03041 Spliceosome [BR:
boe03041
]
106295374
03009 Ribosome biogenesis [BR:
boe03009
]
106295374
03016 Transfer RNA biogenesis [BR:
boe03016
]
106295374
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106295374
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106295374
Spliceosome [BR:
boe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106295374
Complex C
U4/U6.U5 tri-SnRNP related factors
106295374
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
Helicases
106295374
Transfer RNA biogenesis [BR:
boe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106295374
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
106295374
NCBI-ProteinID:
XP_013586713
UniProt:
A0A0D3CLM8
LinkDB
All DBs
Position
C5:complement(43221548..43226547)
Genome browser
AA seq
991 aa
AA seq
DB search
MSTIMESPETLRKRKASESSKLSDETPTTKRRSSQKRACVHEVAVPNGYTPTKEEAIHGT
LDNPLYNGDMAKTYPFQLDPFQSISVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDK
QRVIYTSPLKALSNQKYRELQHEFHDVGLMTGDVTISPNASCLVMTTEILRAMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQ
PCHVVYTDFRPTPLQHYAFPMGGSGLYLVVDENEQFREANFIKMHDTFPKPKSEGKKSAN
GKSGGRGGAKGGGGGGGGGDSDVYKIVKMIMERKFQPVIIFSFSRRECENHALSMSKLDF
NTEEEKSTVEEVFNNAMLCLNEEDRSLSAIEMMLPLLQRGIAVHHSGLLPVLKELVELLF
QEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDE
RGICIIMIDEQMEMDVLKDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQFTAEHVIKHSF
HQFQYEKALPDIENKVTKLEEEAAILDASGKAEVAEYHKLKLDIAPLEKKLMSEIIRPER
VLCFLDTGRLVKIREGGTDWGWGVVVNVVKKTSVGTSSQGGGYIVDTLLHCSTGVSENGA
KPKPSPPRPGEKGEMHVVPVQLPLITALSRLRISVPSDLRPLEARQSILLAVQELSSRFP
LGFPKLHPVKDMNIQDTEIVGLVSQIEEAEQKLLAHPMHKSEDDQQMKSFQRKAEVNYEI
QQFKSKMRDSQLQKFRDELRNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQVAALASCFIPVDKSNEKVELRNELNRPLQQLKDNARKIAEIQHECKLE
IDVEEYVESTIREGLMDVIYCWSTGSTFAEVMNKTDIFEGSIIRSARRLDEFLNQLRLAA
EAVGENNLASKFAAASESLRRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaataatggaatcaccggagacactccgcaagaggaaagcatccgaaagctca
aagctttctgatgagacccccacgacgaagcgcagaagcagccaaaaacgagcttgcgta
cacgaagtcgccgtccccaacggctacacgccaacgaaagaggaagcgattcacggaact
ctcgataaccctttgtacaacggagacatggccaaaacctaccctttccagctcgaccct
ttccagagcatctccgtagcgtgcctggagaggaaagaatcgattttggtctctgctcac
acttcagctggtaaaacagctgttgcggagtatgctattgccatggcgtttagagataag
cagagggtgatctacacttcccctctgaaagcattgagtaaccagaagtatagagagctc
cagcacgagtttcacgacgttggtttgatgaccggtgacgtcacgatctcccctaacgct
agttgcttggtgatgaccacggagattttgagagcgatgctttatagaggctctgaggtt
ttgaaggaggttgcgtgggtgattttcgacgagattcattatatgaaggatagggagaga
ggggttgtttgggaagagagtattattttcttgccgcctgctattaagatggtttttctc
tcggccacgatgtcgaatgctactgagtttgcggagtggatttgctatctgcataagcag
ccgtgtcatgttgtgtatacagactttaggccgacgcctctgcagcattatgcttttcct
atgggtgggagtgggctttaccttgtagttgatgagaatgagcagtttagagaggctaat
ttcattaagatgcatgatactttcccaaagccaaaatctgaggggaaaaagagtgcaaat
ggcaaatcaggtggtaggggcggcgctaaaggtggtggcggcggcggcggtggtggtgat
tctgatgtttacaaaattgtaaagatgatcatggaaagaaagttccaaccagtcatcatc
ttcagcttcagtagaagggaatgtgaaaatcacgcactgtcaatgtcgaaactcgatttt
aatacagaggaagagaagtcgactgtggaagaggtgttcaacaatgctatgctgtgcctg
aatgaggaggatagatctttgtctgccattgagatgatgttgccactgctccaacgtggt
atcgctgtccaccattctggtcttctccctgtcctcaaggaattagtggagcttcttttt
caggaaggacttgtaaaagcgcttttcgccacggaaacttttgctatgggtttgaacatg
cctgcaaaaactgtagtgtttactgctgttaagaagtgggatggtgacagccatcgtttc
attgggtctggtgaatatatccagatgagcggcagggctggacgtcgtggaaaggatgaa
cgtggtatctgcattattatgattgatgaacagatggaaatggatgtactcaaggacatg
atgctgggcaaaccagcccctttgcttagtacttttaggttgagttactacacaattttg
aatctattgagtcgtgccgaaggacaatttacagctgagcatgttataaagcactcgttc
caccaattccaatatgaaaaggctttaccggatattgagaataaggtgaccaaacttgaa
gaggaagctgccatccttgatgcttctggaaaggcggaggttgctgagtaccataagcta
aaacttgacatagctccactggaaaagaaacttatgtcagagataataaggcctgaaagg
gtgctttgttttcttgatactggtcggctggttaagatacgagaaggtggaacagactgg
ggatggggagttgtagttaatgttgttaaaaaaacttccgttggaacctcttcacaaggt
ggcggatatatagtggatactcttcttcattgctccactggtgttagcgagaatggtgca
aagccaaagccgtctcctccccgtcctggggaaaagggtgagatgcatgtggttcctgtt
cagctaccattaattactgctttgagcagactaagaatatcggttccgtctgatcttcgg
ccactagaagcaagacagagcatactactggcagtacaggagttgtcgagtcgcttcccg
ttagggttcccaaaactccatccagtcaaggacatgaatattcaagatacagagatagtg
gggctggtcagccaaattgaagaagctgagcagaagttacttgctcatccgatgcacaag
tctgaagatgatcagcaaatgaagagtttccagagaaaagcggaggtgaattatgaaatt
cagcagttcaagtcgaaaatgcgtgattcccagcttcaaaagtttagagatgagcttagg
aaccgttctcgggtattaaagaaacttggacacattgatgctgatggtgtggttcagtta
aagggacgagctgcctgcttgatagacacaggggatgaactgcttgtcactgaactgatg
ttcaatggtacttttaatgatctggatcatcaccaagtagctgccctcgcaagctgtttc
attcctgtagataaatcaaatgaaaaggtagagctaagaaatgaacttaatagaccgttg
cagcagctcaaagataatgcacggaaaattgcagagatacaacatgaatgcaaactggaa
atagacgttgaagagtatgtagaatccaccatcagggaaggcctaatggacgttatctac
tgttggtcaacgggttcgacctttgcagaggttatgaataagactgacatattcgaggga
agtatcattaggagcgctagaaggctcgacgagtttctgaaccagcttcgacttgcagcg
gaagcagttggagagaataatttggcgagcaagtttgcagctgctagcgagagcttgcga
agaggtattatgtttgcgaattcgctttatttataa
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